2008 | 2007 | 2006 | 2005

 

2008

  • M.B.Dail, L.A.Shack, S.C.Burgess and J.E.Chambers. 2008 Nonelectrophoretic proteomic analysis of the liver of rats following exposure to phenobarbital. 47th Annual Meeting of the Society of Toxicology March 16 –20, Seattle, Washington.

2007

  • A.M. Cooksey, N. Wang, S.M. Bridges and S.C. Burgess (2007). Proteomic Analysis of Human Psychological Stress. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • B Nanduri, M L Lawrence and S. C. Burgess. 2007. Systems analysis of Pasteurella multocida response to sub-minimum inhibitory concentrations of antibiotics. Proceedings of the Mississippi Academy of Sciences seventy-first annual meeting. Oral. Feb 22nd-23rd, 2007, Mississippi State University, MS.
  • Bridges, S. M., R. Kelly, G. B. McGee, N. Wang, S. C. Burgess, D. S. Luthe, and P. Williams. 2007. Microbial Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • Burgess, S. C. 2007. Functional genomic analysis of Marek’s disease lymphomagenesis directly ex-vivo. USDA Animal Protection project director workshop December 5, Chicago, IL.
  • Burgess, S. C. 2007. The mechanics of Marek’s disease lymphoma progression and regression. USDA Animal Protection project director workshop December 5, Chicago, IL.
  • Buza. T. J, F. M. McCarthy, N. Wang, S. M. Bridges and S.C. Burgess. 2007. Evaluation of factors affecting functional annotation quality in eukaryotic genomes. Proceedings of the Mississippi Academy of Sciences seventy-first annual meeting. Poster. Feb 22nd-23rd, 2007, Mississipi State University, MS.
  • Cohly D, Cole Z, Isokpehi R, Rajnarayanan R, Cohly HHP (2007) Photochemical & redox control of hydrogen gas production in cyanobacteria. Mississippi Academy of Sciences, Seventy-First Annual Meeting. Journal of the Mississippi Academy Sciences 1: 52
  • Cohly HHP, Cohly D, Isokpehi RD and Rajnarayanan RV (2007) Is Aquaporin a Natural Receptor for Anthrax Protective Antigen? Session 3: Computational Biology and Bioinformatics. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society held at the University of New Orleans (February 1-3, 2007).
  • Cole Z, Cohly D, Isokpehi R, Rajnarayanan R, Cohly HHP (2007) Relationship between the number of aquaporins and hydrogen gas production in cyanobacteria. Mississippi Academy of Sciences, Seventy-First Annual Meeting. Journal of the Mississippi Academy Sciences 1: 53
  • Cooksey A.M., M.D. Koter, A. Corzo, T.S. Cummings, M.T. Kidd and S.C. Burgess 2007. Quantitative serum proteomics of a tryptophan depleted diet using 18O labeling and a RuBisCO internal standard. Proceedings of the Mississippi Academy of Sciences seventy-first annual annual meeting. Poster. Feb 22nd-23rd, 2007, Mississipi State University, MS.
  • D. Peddinti, B. Nanduri, A. Kaya, J.Feugang, E.Memili, S. C. Burgess. 2007. Proteomics and systems biology of bovine male fertility. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007.
  • Debarati Paul, Susan Bridges, Shane Burgess, Todd French, Yoginder Dandass, and Mark Lawrence. Draft genome sequence of biodiesel producing Oligotropha carboxidovorans OM5 Mississippi State University Biofuels Conference, August 27, 2007.
  • Deng Y, Development of Classifiers on Hamner Lung Tumor data set (05+06) using different classification methods, The 7th MAQC project face-to-face meeting, May 24-25, Cary, North Carolina.
  • Deng Y, Puneet B, Identification of lipid markers of prostate cancer using lipid profiling, Letter Day of University of Southern Mississippi, Aug. 31, Hattiesburg, Mississippi
  • Diehl, R. H., W. Barrow, and J. Buler. 2007. Habitat-migrant use along the gulf coast: a radar perspective. Southeast Partners-in-Flight Conference. Memphis, Tennessee. 7-9 February.
  • F. M. McCarthy, S. C. Burgess, N. Wang,and S. M. Bridges. Cattle/Sheep Genomes Workshop "AgBase: Enabling Functional Genomics Analysis in Ruminants". 2007. Avian Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • F. M. McCarthy, S. C. Burgess, N. Wang and S. M. Bridges. Plant-Associated Microbe Gene Ontology (PAMGO) / Institute of Digital Biology – AgBase. 2007. Joint presentation from Cornell University and MSU IDB. Avian Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • Habib T, Deng Y, SVM based prediction for subcellular location of proteins using amino acid pair composition, Proceeding of IEEE BIBE 2007 (accepted).
  • Habib T, Deng Y, SVM based prediction for subcellular location of proteins using amino acid pair composition, The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • Hongbo Zheng, Fang Yu Yueh, Markandey Tiwari, Shane Burgess, Jagdish P Singh . Laser Induced Breakdown Spectroscopy: Application to Tissue Analysis. North American Symposium on Laser Induced Breakdown Spectroscopy (NASLIBS) Conference. Oct 8-10, 2007, New Orleans, LA, USA.
  • Isokpehi RD, Cohly HHP, Williams BS, Palm D, Davids BJ, Birkeland SR, Cipriano MJ, Preheim SP, Gillin FD, Svard SG, and McArthur AG (2007) Prioritized cyst-upregulated genes from the Giardia lamblia genome. Session 3: Computational Biology and Bioinformatics. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society held at the University of New Orleans (February 1-3, 2007).
  • Isokpehi RD. (2007) Data mining of malaria parasite gene expression for possible translational research. Methods of Microarray Data Analysis V. pp 1-10.
  • Kumar S, Buza J, Nanduri B and S. C. Burgess 2007. Modelling of CD30High lymphomas using Marek’s disease in chicken as a natural animal model. Proceedings of the Mississippi Academy of Sciences seventy first annual meeting. Oral. Feb 22nd-23rd, 2007, Mississippi State University, MS.
  • Li P, Zhang C, Deng Y, Comparison of computational approaches for modeling gene regulatory networks, The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • Li, P., Chaoyang Zhang and Youping Deng, Comparison of Computational Approaches for Modeling Gene Regulatory Networks, The Forth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society. (MCBIOS’07), New Orleans, Feb. 1-3, 2007.
  • M. Eddy, D. Kunec, S. C. Burgess. Identification of herpesvirus-host protein interactions using sequential peptide affinity purification and mass spectrometry. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • M.L. Lawrence, S. C. Burgess, B. Nanduri and S. M. Bridges. Experimental annotation of bovine respiratory disease pathogen genomes by protegenomic mapping. Microbial Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • Mao J, Habib T, Kang B, Ming S, Deng Y, Transcriptome profiling of Saccharomyces cerevisiae mutants lacking C2H2 zinc finger proteins, The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • McCarthy F.M., Wang N., Bridges S.M. and Burgess S.C. "Welcome To GO: A GO User’s Retrospective. 2007. Avian Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • Murray JM, Cohly HHP, Rajnarayanan RV, Isokpehi RD (2007) AQP1 and AQP4: Comparative gene structures of human, mouse, rat and zebrafish orthologs. Poster Presentation at the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, February 1-3, 2007.
  • Nan Wang, Ranjit Kumar, Mark Lawrence, Shane Burgess, Todd French, Yoginder Dandass, and Susan Bridges. Proteogenomic mapping for improved annotation of genomes for biofuels production. Mississippi State University Biofuels Conference, August 27, 2007.
  • P. Antin, S.C. Burgess, C. Schmidt, S. M. Bridges, F. M. McCarthy, R. Lader, G. Sheng, L. Stein, Jerry Dodgeson, O. Tassey, O. Pourquie. (All equal contributors). BirdBase: Proposal for a model Organism Database.2007. International Chick Meeting. Oral. 11-14 April, Barcelona, Spain.
  • Peddinti. D, B. Nanduri, E. Memili and S. C. Burgess. 2007. Understanding bovine germinal vesicle oocyte and cumulus development-A systems biology approach. Proceedings of the Mississippi Academy of Sciences seventy-first annual meeting. Poster. Feb 22nd-23rd, 2007, Mississippi State University, MS.
  • Pirooznia M, Deng Y, Efficiency of hybrid normalization of microarray gene expression: a simulation study, The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • Pirooznia M, Deng Y, Efficiency of hybrid normalization of microarray gene expression: A simulation study. AINA Workshops (1) 2007: 739-744
  • Pirooznia M, Gong P, Yang K, Perkins EJ, Deng Y, Analysis and functional annotation of expressed sequence tags from the Earthworm (Eisenia fetida). The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • Pirooznia M, Rawat A, Yang JY, Perkins EJ, Deng Y, An effective Interwoven loop design application for two-channel microarray experiments, Proceeding of IEEE BIBE 2007 (accepted).
  • Pirooznia M, Deng Y, A comparative study of differential machine learning methods on microarary gene expression data. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • R Kumar, B. Nanduri, S.C. Burgess, M.L Lawrence. Tiling array analysis of Streptococcus pneumonia TIGR4 response to in vitro iron restriction. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • Rajendran A, Li P, Zhang C, Deng Y, Parallel implementation of Multi-class SVM and its application for classifying gene expression data. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • Rajendran KA, Li P, Zhang C and Deng Y, Parallel Training of Multi-class Support Vector Machines Using Sequential Minimal Optimization, Proceedings of International Conference on Machine Learning; Models, Technologies and Applications (MLMTA’07), pp. 31-37.
  • Rajendran, A., Li Peng, Chaoyang Zhang and Youping Deng, Parallel Implementation of Multi-class SVM and its application for Classifying Gene Expression Data, The Forth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society. (MCBIOS’07), New Orleans, Feb. 1st-3rd, 2007.
  • Rajendran, A., P. Li, C. Zhang, and Y. Deng, Parallel Training of Multi-class Support Vector Machines Using Sequential Minimal Optimization, Proceedings of International Conference on Machine Learning; Models, Technologies and Applications (MLMTA’07).
  • Rico.Cohly HHP, Isokpehi RD Rajnarayanan RV (2007) Inhibitors of aquaporins as novel anti-cancer drugs. 3rd Annual National Symposium on Prostate Cancer. Clark Atlanta University, Atlanta GA, March 19-20, 2007
  • S. C. Burgess, F. M. McCarthy, N. Wang,and S. M. Bridges. AgBase: Facilitating Analysis of Chicken Functional Genomics Datasets. 2007. Avian Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • S. C. Burgess, F. M. McCarthy, N. Wang,and S. M. Bridges. Hypothesis-driven data modeling from GO using the AgBase tools. 2007. Avian Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • S. Kumar, J. J. Buza and S.C. Burgess. 2007. Cytokine profiles in Marek’s disease: lymphoma resistant vs susceptible genotypes. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • S.C. Burgess, S. M. Bridges, F. M. McCarthy and N. Wang. ChickGO@AgBase. International Chick Meeting. 2007. Oral. 11-14 April, Barcelona, Spain.
  • Shane Burgess, Susan Bridges Fiona McCarthy, Nan Wang. 2007. ChickGO @ AgBase: AN UPDATE AND PRIMER. 2007. International Chick Genome Meeting: the chick as a model organism: genes, development and function 11-14 April, Barcelona, Spain.
  • Susan Bridges, Nan Wang, Teresia Buza, Fiona mccarthy, Shane Burgess. 2007. Experimental structural annotation of the chicken genome using proteogenomic mapping. International chick genome meeting: the chick as a model organism: genes, development and function 11-14 April, Barcelona, Spain.
  • T. Buza, F.M. McCarthy, N. Wang, S.M. Bridges, S.C. Burgess. 2007. Measurement of Gene Ontology Annotation Quality in Eukaryotes. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • Thodima VJ, Deng Y, Structural evolution of the GAPDH-like C-terminal domain (CTD) superfamily. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • van den Berg B.H.J., Lamont S.J, Burgess S.C. Genetic resistance to Salmonella in chicken; a proteomic puzzle. Proceedings of the Mississippi Academy of Sciences 71st annual meeting, Starkville, Mississippi, United States, February 21-23, 2007
  • van den Berg, B.H.J., McCarthy, F.M., Burgess, S.C., Annotation and modeling of a 13K chicken cDNA microarray. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • Yang JY, Yang MQ, Niemierko A and Deng Y, Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy, Proceeding of IEEE BIBE 2007 (accepted).
  • Yoginder Dandass, Shane Burgess, Mark Lawrence, Todd French, Susan Bridges. Acceleration of gene annotation pipelines using configurable hardware. Mississippi State University Biofuels Conference, August 27, 2007.
  • Zeng XQ, Li GZ, Deng Y, Yang MQ and Yang JY, Tumor Classification by Integrating Partial Least Squares based Dimension Reduction with Irrelevant Gene Elimination. Proceeding of IEEE BIBE 2007 (accepted).
  • Zhang C, Dargan S, Lan H and Deng Y, Web-based Information Retrieval with Local and Global Link Analysis. Information and Knowledge Engineering (IKE’07) Proceedings of International Conference on Information and Knowledge Engineering (IKE’07), pp 117-123
  • Zhang, C, S. Dargan, H. Lan, and Y. Deng, Web-based Information Retrieval with Local and Global Link Analysis, Proceedings of International Conference on Information and Knowledge Engineering (IKE’07)

2006

  • Amanda M. Cooksey, Marek D. Koter, Alejandro Corzo, Timothy S. Cummings, Michael T. Kidd, Shane C. Burgess. 2006. Quantitative serum proteomics of a tryptophan depleted diet using 18O labeling and a RuBisCO internal standard. 7th annual Phi Zeta Research Day of the Omega Chapter of Phi Zeta sponsored by Novartis Animal Health US Inc.
  • B. Nanduri, S. C. Burgess, C. R. Boyle, L. A. Shack and M. L. Lawrence. 2006. Transcription profiling of the Pasteurella multocida response to sub-minimum inhibitory concentrations of three antibiotic classes using microarrays. 106th American Society for Microbiology General Meeting, Orlando, FL.
  • Bennett, M., Julie Stone, Chaoyang Zhang, A Scalable Parallel HITS Algorithm for Page Ranking, Proceedings of the HPCTA06 Symposium of IMSCCS’06. Published by IEEE Computer Society, ISBN: 0-7695-2581-4. pp. 437-442.
  • Bindu Nanduri, Shane C. Burgess and Edward B. Allen. 2006. Software applications for integration and analysis of mass spectroscopy data. 54th American Society for Mass Spectrometry Conference Seattle, Washington, USA
  • Bridges S.M., McCarthy F.M., Wang N., Magee G.B., Nanduri B. and Burgess S.C. (2006). The AgBase GO Annotation Tools. International Gene Ontology Users Meeting. 10 September, 2006. Seattle, Washington, USA..
  • Bridges, S. M., F. M. McCarthy, M. L. Lawrence, B. Nanduri, D. Kunec, A. M. Cooksey, A. Corzo, M. D. Koter, J. J. Buza, B. H. J. van den Berg, N.
  • Wang, and S. C. Burgess. 2006. High throughput non-electrophoretic proteomics and Gene Ontology for modeling biological function in chicken, cow and channel catfish research. Proteomics Workshop, Plant and Animal Genome XIV Conference, January 14-18, 2006. San Diego, California.
  • Bridges, S. M., N. Wang, F. M. McCarthy, and S. C. Burgess. 2006. The Gene Ontology and the chicken genome: attributes in search of a product. International Workshop on Chicken genomics & development. May 7-10, 2006. Cold Spring Harbor Laboratories, NY.
  • Bridges, S., F. M. McCarthy, N. Wang, G. B. Magee, B. Nanduri, and S. C. Burgess. 2006. The AgBase GO annotation tools. GO Consortium User Meeting September 10, 2006, Seattle, USA.
  • Buler, J. J., F. R. Moore, R. H. Diehl, and S. Woltmann. 2006. Multi-scale view of habitat use by landbirds during migratory stopover. 4th North American Ornithological Conference. Veracruz, Mexico. 3 – 7 October.
  • Buler, J., R. H. Diehl, and F. R. Moore. 2006. Application of WSR-88D to quantify bird distributions during migratory stopover. Applying radar technology to migratory bird conservation and management: strengthening and expanding a collaborative effort – workshop. Albuquerque, New Mexico. 24-26 October.
  • Buza, J. J., L. A. Shack, and S. C. Burgess. 2006. Modeling the functional genome of neoplastic transformation in Marek’s disease. 4th International Workshop on the Molecular Pathogenesis of Marek’s Disease Virus University of Delaware. August 4-8, 2006.
  • Buza, T., D. Peddinti, B. McGee, S. Bridges, F. M. McCarthy, and S. C. Burgess. 2006. Chicken Gene Nomenclature based on the nearest Human Orthologs. 4th annual MSU Graduate Student Association Research Symposium.
  • Chamali L. Thanthiriwatte, Dusan Kunec, Susan M. Bridges ,Bindu Nanduri and Shane Burgess. 2007. DecoyPepFilter: A Tool for Validation of Peptide Identifications from Mass Spectrometry. The Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS). March 2nd-4th 2006, Baton Rouge, Louisiana.
  • Cohly HHP, Isokpehi RD, Varadharajan S, Sims J and Rajnarayanan RV (2006) Ionic Control of Water Transport in Aquaporins. Tenth Research Centers in Minority Institutions (RCMI) International Symposium on Health Disparities December 13-16, 2006, San Juan, Puerto Rico.
  • Cohly HHP, Rajnarayanan RV and Isokpehi RD (2006) Polar trafficking of AQP2 controls DIABETES (NDI). Fifth Annual Conference on Eliminating Health Disparities in Mississippi (Diabetes and Obesity) October 19, 2006.
  • Cohly HHP, Rajnarayanan RV, and Isokpehi RD (2006) Compartmentalization of aquaporins in the human intestine (PA-14). Third International Symposium on Recent Advances in Environmental Health Research, September 17-20, 2006.
  • Cooksey, A. M., N. Wang, N. Momen, S. Doane, S. Bridges, and S. C. Burgess. 2006. Identifying biomarkers predictive of performance under stress. Inaugural Institute for Neurocognitive Science and Technology Research Forum
  • Cooksey, A. M., N. Wang, N. Momen, S. Doane, S. Bridges, and S. C. Burgess. 2006. The human performance plasma proteome. 4th annual MSU Graduate Student Association Research Symposium.
  • D. Chan, S. C. Burgess, and S. M. Bridges. 2006. An Ensemble Method for Identifying Robust Features for Biomarker Identification. Proceedings of the International Workshop on Feature Selection for Data Mining:Interfacing Machine Learning and Statistics. Bethesda, Maryland.
  • Diana Chan, Susan Bridges, Shane Burgess. ,2006. An Ensemble Method for Identifying Robust Features for Biomarker Identification. International Workshop on Feature Selection for Data Mining: Interfacing Machine Learning and Statistics,April 22, Bethesda, Maryland
  • Diehl, R. H. 2006. Bird strike mortality and wind energy. Wind Energy Development and Wildlife workshop, North American Wildlife and Natural Resources Conference. Columbus, Ohio. 20 – 21 March .
  • Diehl, R. H. 2006. Comments on the radar biology workshop: view from a research perspective. Applying radar technology to migratory bird conservation and management: strengthening and expanding a collaborative effort – workshop. Albuquerque, New Mexico. 24-26 October.
  • Diehl, R. H. 2006. Weather as a hazard to migratory birds. 4th North American Ornithological Conference. Veracruz, Mexico. 3 – 7 October.
  • Diehl, R. H., R. K. Felix, and J. M. Ruth. 2006. Regional structure in migratory patterns across the southwest. Applying radar technology to migratory bird conservation and management: strengthening and expanding a collaborative effort – workshop. Albuquerque, New Mexico. 24-26 October.
  • Diehl, R., F. Moore, J. Buler, W. Barrow, Z. Nemeth, M. Hughes. 2006. Understanding the impact of hurricanes on migratory birds: a scale dependent approach. 91st Annual Meeting of the Ecological Society of America. Memphis, Tennessee. 6-11 August.
  • Dusan Kunec, Bindu Nanduri, Larry A. Hanson, Shane C. Burgess. 2006. Experimental annotation of the Channel Catfish Herpesvirus genome. 54th American Society for Mass Spectrometry Conference Seattle, Washington, USA.
  • Erdogan Memili, Divyaswetha Peddinti, Hakan Sagirkaya and Shane C Burgess.. 2006. Descriptive proteomics of bovine oocytes and cumulus cells. 39th Annual Meeting of the Society for the Study of Reproduction, Omaha, Nebraska.
  • F. M. McCarthy, Burgess, S. C., N. Wang, B. Nanduri, and S. M. Bridges. 2006. AgBase: Facilitating Functional Genomics in Agricultural Species. Conference of Research Workers in Animal Diseases, December 3-5, Chicago, IL.
  • Felix, R. K. and R. H. Diehl. 2006. Patterns aloft of songbird migrants in the southwestern United States. 4th North American Ornithological Conference. Veracruz, Mexico. 3 – 7 October.
  • Felix, R., R. H. Diehl, and F. R. Moore. 2006. Use of weather radar in studies of bird migration in the southwest: overcoming radar beam occultation. 70th Annual Meeting of the Mississippi Academy of Sciences. Vicksburg, Mississippi. 22 – 24 February.
  • G. Bryce Magee, Bindu Nanduri, Susan M. Bridges, Shane Burgess, and W. Paul Williams. 2007. ProtQuant: A Tool for the Label-Free Quantification of Shotgun Proteomics Data. The Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS). March 2nd-4th 2006, Baton Rouge, Louisiana.(Second place in the student poster competition).
  • Gu, Junfeng, R. Diehl, and D. Ali. 2006. Radar data processing and visualization for biological targets. 12th International Conference on Industry, Engineering, and Management Systems. Cocoa Beach, Florida. 13 – 15 March.
  • Hongbo Zheng, H., F. Y. Yueh, S. C. Burgess, and J. P. Singh. 2006. Laser Induced Breakdown Spectroscopy-Application to Tissue Analysis. Proceedings of the Laser Applications to Chemical, Security and Environmental Analysis (LACSEA2006), Optical Society of America (OSA) Topical Meeting , February 5-9, Nevada.
  • Imamoglu, H., C. Hui, B. Nanduri, S. C. Burgess, and G. Thomas. 2006. Streptavidin hydrogels for microfluidic-based transcription factor assays. American Electrophoresis Society Annual Meeting. Augusta, GA.
  • Isokpehi RD, Cohly HHP and Tchounwou PB (2006) Text Mining and Ontology Development for Biomedical Discoveries in Environmental Health and Health
  • Disparities. Tenth Research Centers in Minority Institutions (RCMI) International Symposium on Health Disparities December 13-16, 2006, San Juan, Puerto
  • Isokpehi RD, Rajnarayanan RV, Cohly HHP (2006) Density of glycocalyx determines site specific localization of aquaporins in the kidney? (PA-20). Third International Symposium on Recent Advances in Environmental Health Research, September 17-20, 2006.
  • Klaassen, I., B. H. J. van den Berg, W. E. Holmes, and S. C. Burgess. 2006. Increasing proteome coverage using High Performance Liquid Chromatography. Fontys University international student presentation day, Nerherlands, 2006.
  • Kunec D, Nanduri, B, Burgess, S C. 2006. A Probability-based Scoring Method for Experimental Genome Mining by Proteomics.EPSCoR National Conference 2006. November 7-10, Lexington, KY.
  • Kunec, D., B. Nanduri, and S. C. Burgess. 2006. Genome mining by proteomics: experimental annotation of a herpesvirus 4th annual MSU Graduate Student Association Research Symposium.
  • M.B.Dail , S.C.Burgess, M.K.Ross and J.Chambers. 2006. Effects of Dieldrin and Phenobarbital on the Levels of Messenger RNA of Toxicologically Important Genes. 45th Annula Meeting of the Society for Toxicology, March 5-9, San Diego, DA.
  • McCarthy F.M., Bridges S.M. and Burgess S.C. (2006). Increasing GO annotation through community involvement. International Gene Ontology Users Meeting. 10 September, 2006. Seattle, Washington, USA.
  • McCarthy, F. M., N. Wang, T. J. Buza, D. Peddinti, S. M. Bridges, and S. C. Burgess. 2006. AgBase and the Ruminant Genomes: GOing towards Greener Pastures. Cattle/Sheep Workshop, Plant and Animal Genome XIV Conference, January 14-18, 2006. San Diego, California.
  • McCarthy, F. M., N. Wang, B. Nanduri, S. M. Bridges, and S. C. Burgess. 2006. Proteomics and Gene Ontology: Analyzing Function in a Post-Genomic World. 11 October 2006. Queensland Government, Department of Primary Industries and Fisheries. Australia.
  • McCarthy, F. M., S. Bridges, and S. C. Burgess. 2006. Increasing GO annotation through community involvement GO Consortium User Meeting September 10, 2006, Seattle, USA.
  • N. Wang, F. M. McCarthy, S. C. Burgess, and S. M. Bridges. 2006. AgBase GO Toolkit: A Gene Ontology Annotation Toolkit for Large Scale Protein Datasets. 2006. 3rd Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, March 2-4, Baton Rouge, LA.
  • Nevels C, Bland C and Isokpehi RD (2006) Predicting MEDLINE Abstracts Relevant to Salt Tolerance in Plants. Poster K-16 2006 Intelligent Systems for Molecular Biology Conference, August 6-10, 2006
  • Nieuwenhuizen, I. F., D. Kunec, and S. C. Burgess. 2006. Sequential Peptide Affinity (SPA)-tagging and purification of Channel Catfish Virus (CCV) protein complexes. Fontys University final examination presentation, Holland.
  • Peddinti, D., and Buza, T. 2006. GO Annotation Camp: Manual Curation of Research Literature. July 12-14. Stanford University, Stanford, CA
  • Peddinti, D., B. H. J. van den Berg, E. Memilli, H. Sagirkayan, F. M. McCarthy, B. Nanduri, and S. C. Burgess. 2006. Bovine oocyte and cumulus cell proteomes and their functional implications. 4th annual MSU Graduate Student Association Research Symposium.
  • Pflueger, M., D. Kunec, and S. C. Burgess. 2006. Quantifying the effect of CD30 signaling via NF-?B in the neoplastically transformed cells on Marek’s Disease Virus Meq transcription. Merk-Merial Veterinary Student Summer Research Symposium, Baton Rouge, LA.
  • Qiao, J., Yang Ye, and Chaoyang Zhang, Parallelization of Similarity Search in Large Time Series Databases, Proceedings of the High Performance Technology and Applications (HPCTA) Symposium of IMSCCS’06. Published by IEEE Computer Society, ISBN: 0-7695-2581-4. pp. 355-362.
  • Rajendran A, Zhang C, Li P, Deng Y, Efficient support vector machines through parallel computing, 2006, Mississippi Academy of Sciences.
  • Rajnarayanan RV, Cohly HHP, and Isokpehi RD (2006) Glycocalyx targeting of AQP7 controls Obesity. Fifth Annual Conference on Eliminating Health Disparities in Mississippi (Diabetes and Obesity) October 19, 2006.
  • Rajnarayanan RV, Isokpehi RD, Cohly HHP (2006) Differential compartmentalization, function and localization of aquaporins 1, 2 & 3 in the human kidney. (PA-17). Third International Symposium on Recent Advances in Environmental Health Research, September 17-20, 2006.
  • S. C. Burgess McCarthy, F. M., N. Wang, T. J. Buza, D. Peddinti, and S. M. Bridges. 2006. Where to GO for chicken gene ontology. Avian Genomes Workshop, Plant and Animal Genome XIV Conference, January 14-18, 2006. San Diego, California.
  • Shim, J. W., S. C. Burgess, and S. H. Elder. 2006. Induction of fibrocartilaginous metaplasia in tenocytes by hydrostatic compression. 52nd annual meeting of the Orthopaedic Research Society, New Orleans.
  • Shim, J. W., S. C. Burgess, and S. H. Elder. 2006. Induction of Transdifferentiation in Pellet Cultured Tenocytes to Cartilaginous Phenotype under Cyclic
  • Hydrostatic Pressure – Oral presentation. World Congress on Medical Physics and Biomedical Engineering 2006, Seoul, Korea Aug. 27 to Sep. 1, 2006. Selected as one of 10 finalists from over 100 entries for the Young Investigator’s Competition Award.
  • Simmons S and Isokpehi RD (2006) Alternative Splicing Events of Stress Responsive Genes encoding Universal Stress Protein Domains in Arabidopsis and Rice. Poster A-17. 2006 Intelligent Systems for Molecular Biology Conference, August 6-10, 2006
  • Simmons S, Isokpehi RD (2006) Alternative splicing events of genes in Arabidopsis and Rice encoding the universal stress protein domain. LSMAMP National Research Conference. November 17, 2006, Jackson, Mississippi
  • Sojda, R., J. Paxton, R. Mead, R. Angryk, R. H. Diehl, and R. Klaver. 2006. Can artificial intelligence be used to detect birds in NEXRAD data? Applying radar technology to migratory bird conservation and management: strengthening and expanding a collaborative effort – workshop. Albuquerque, New Mexico. 24-26 October.
  • Susan Bridges, Rowena Kelley, Gregory Bryce Magee, Nan Wang, Shane Burgess, Dawn S. Luthe, and W. Paul Williams. 2006. Annotation and computational analysis of maize proteome and genome expression datasets. Aflatoxin/Fumonisin and Fungal Workshops, October 16-18, 2006, Dallas, TX.
  • Thanthrige-Don, N., M. F. Abdul-careem, P. Shewen, J. Lumstdem, J. Caswell, S. C. Burgess, and S. Sharif. 2006. Characterization of protein expression in chicken spleen in response to Marek’s disease virus infection by two-dimensional gel electrophoresis. 4th International Workshop on the Molecular Pathogenesis of Marek’s Disease Virus University of Delaware. August 4-8.
  • Thodima V, Pirooznia M, Deng Y, RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers. March 2-4, 2006, Baton Rouge, Louisiana.
  • Thomas, G., and S. C. Burgess. 2006. Microfluidic Analysis for Transcription Factor Binding Studies. Southeast Regional Meeting of the National Organization of Black Chemists and Chemical Engineers, Atlanta, GA.
  • Thomas, G., and S. C. Burgess. 2006. Microfluidic Hydrogels for Bioanalytical Applications: Metabolite Analysis and Transcription Factor Assays. Eastern Analytical Symposium, Somerset, NJ.
  • van den Berg, B. H. J., I. Klaassen, S. Lamont, H. Zhou, and S. C. Burgess. 2006. Non-electrophoretic quantitative proteome mapping of Salmonella response in chicken. 4th annual MSU Graduate Student Association Research Symposium.
  • van den Berg, B. H. J., S. J. Lamont, W. E. Holmes, and S. C. Burgess. 2006. Novel non-electrophoretic proteomics for identifying resisantce genes in a Salmonella model. 231st American Chemical Society National Meeting & Exposition. Atlanta, GA, March 26-30, 2006.
  • William S. Sanders, Susan A. Bridges, Fiona McCarthy, and Shane C. Burgess. 2007. PepFly: A Tool for the Prediction of Peptides Observed by Mass Spectra. The Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS). March 2nd-4th 2006, Baton Rouge, Louisiana.
  • Yang K, Deng Y, Zhang C, and Elasri M, Identification of New Members of Hydrophobin Family Using Primary Structure Analysis. March 2-4, 2006, Baton Rouge, Louisiana.
  • Yang, K., Chaoyang Zhang and Youping Deng, New Members Identified in Hydrophobiin Family as Potential Polymer Materials by Primary Structure Analysis, Poster for at the 3rd Annual MidSouth Computational Biology and Bioinformatics Society (MCBIOS’06).
  • Zhang C, Li P, Rajendran A and Deng Y, Parallel Multicategory Support Vector Machines (PMC-SVM) for Classifying Microcarray Data. March 2-4, 2006, Baton Rouge, Louisiana.
  • Zhang, C., Peng Li and Youping Deng, Parallel Support Vector Machines for Classifying MIcroarray Data, The Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society. (MCBIOS’06), Baton Rouge, March 2nd-4th, 2006.
  • Zhang, C., Peng Li, Arun K. Rajendran, and Youping Deng Parallel Support Vector Machine for Classifying Microarray Data, Proceedings of IMSCCS’06. Published by IEEE Computer Society, ISBN: 0-7695-2581-4. pp. 110-115.

2005

  • Buler, J. J., F. R. Moore, and R. H. Diehl. 2005. Landscape-scale habitat use by landbirds during migratory stopover near an ecological barrier as revealed by weather radar and ground surveys. WOS and AFO Joint Meeting. Beltsville, Maryland. 21-24 April.
  • Buler, J. J., F. R. Moore, and R. H. Diehl. 2005. Landscape-scale habitat use by landbirds during migratory stopover near an ecological barrier. 123rd Meeting of the American Ornithologists’ Union. Santa Barbara, California. 23 – 27 August
  • Buler, J. J., R. H. Diehl, and F. R. Moore. 2005. Mapping stopover areas of migrating birds along the northern coast of the Gulf of Mexico using weather radar. Southeastern Partners in Flight annual meeting. McAllen, Texas. 16 – 18 February.
  • Deng Y, Chokalingam V, Elasri MO and Zhang C, Improved MCC for Clustering Of Gene Expression Data, 13th International Conference on Intelligent Systems for Molecular Biology, Detroit, Michigan, USA, June 24-29, 2005
  • Deng Y, Chokalingam V, Zhang C, Markov chain correlation based clustering of gene expression data. Proceeding of International Conference on Information Technology Coding and Computing, 2005, 750-755(indexed in DBLP).
  • Deng Y, Kayarat D, Elasri MO, Brown SJ, Microarray data clustering using particle swarm optimization K-means algorithm. Proceeding of Eighth Joint Conference on Information Sciences (JCIS 2005), Salt Lake City, July 2005, 1730-1734.
  • Deng, Y., Chokalingam, V. and Zhang, C., Markov Chain Correlation Based Clustering of Gene Expression Data, Proceedings of the International Conference on Information Technology: Coding and Computing (IEEE ITCC 2005), Information Technology in Bioinformatics and Biomedical Computing, Las Vegas, April, 2005. Published by IEEE Computer Society. pp. 1-6. 2005.
  • Deng, Y., Venkatachalam Chokalingam, Chaoyang Zhang, Mohamed O. Elasri, Clustering Of Gene Expression Data By Improved Markov Chain Correlation, 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB’05), Detroit, Michigan, USA, June 24-29, 2005.
  • Isokpehi RD and Sarpong DF (2005). Binary-encoded single nucleotide polymorphism annotation of environmental response human genes. Second International Symposium on Recent Advances in Environmental Health Research, September 2005.
  • Kaushik N, Zhang C, Murali B, Nagarajan V, Lakhera S and Deng Y, Parallel virtual screening for prediction of antimicrobial activity using Fourier transforms. Proceeding of PDPTA’05 – The 2005 International Conference on Parallel and Distributed Processing Techniques and Applications, Las Vegas, Nevada, USA, June 2005, 1355-1362 (indexed in DBLP).
  • Kaushik, N. C. Zhang, et. al., "Parallel Virtual Screening for Prediction of Antimicrobial Activity Using Fourier Transforms," Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’05). Published by CSREA Press.
  • Kaushik, N., Chaoyang Zhang, et. al., "Parallel Virtual Screening for Prediction of Antimicrobial Activity Using Fourier Transforms," Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’05).
  • Lu J, Xie L, Sylvester J, Chen J, Deng Y, Yang SS, Wang W, Profiling gene expression in weight control mice via calorie restriction and exercise. AAA Annual Meeting at EB 2005, April 2-6, San Diego, CA
  • Nagarajan V, Kaushik N, Murali B, Zhang C, Lakhera S, Elasri MO and Deng Y, A fourier transformation based method to mine peptide space for antimicrobial activity. December 2-4, 2005. Auburn University, Auburn, Alabama.
  • Raveendran NN, Pondugula SR, Deng Y, Chen J, Marcus DC. Expression of ion transport-related genes in semicircular canal duct (SCCD) epithelium. Experimental Biology 2005, San Diego.
  • Raveendran NN, Pondugula SR, Deng Y, Chen J, Marcus DC. Microarray Analysis of Ion Transport-Related Genes in Semicircular Canal Duct Epithelium. Assoc. Res. Otolaryngol. 2005
  • Yang, Y., Zhang, C., et. al., Parallel computation of sensitivity analysis in optical tomography, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’05).
  • Yang, Y., Zhang, C., et. al., Parallel computation of sensitivity analysis in optical tomography, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’05). CSREA Press, vol. I, 1042-1048, 2005.
  • Zhang, C., Lan, H. and Estrade, B. D., Parallel SOR iterative algorithms and performance evaluation on a Linux cluster, Proceedings of International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’05). Published by CSREA Press. pp. 263-269.