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2008

  • M.B.Dail, L.A.Shack, S.C.Burgess and J.E.Chambers. 2008 Nonelectrophoretic proteomic analysis of the liver of rats following exposure to phenobarbital. 47th Annual Meeting of the Society of Toxicology March 16 –20, Seattle, Washington.

2007

  • A.M. Cooksey, N. Wang, S.M. Bridges and S.C. Burgess (2007). Proteomic Analysis of Human Psychological Stress. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • B Nanduri, M L Lawrence and S. C. Burgess. 2007. Systems analysis of Pasteurella multocida response to sub-minimum inhibitory concentrations of antibiotics. Proceedings of the Mississippi Academy of Sciences seventy-first annual meeting. Oral. Feb 22nd-23rd, 2007, Mississippi State University, MS.
  • Bridges, S. M., R. Kelly, G. B. McGee, N. Wang, S. C. Burgess, D. S. Luthe, and P. Williams. 2007. Microbial Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • Burgess, S. C. 2007. Functional genomic analysis of Marek’s disease lymphomagenesis directly ex-vivo. USDA Animal Protection project director workshop December 5, Chicago, IL.
  • Burgess, S. C. 2007. The mechanics of Marek’s disease lymphoma progression and regression. USDA Animal Protection project director workshop December 5, Chicago, IL.
  • Buza. T. J, F. M. McCarthy, N. Wang, S. M. Bridges and S.C. Burgess. 2007. Evaluation of factors affecting functional annotation quality in eukaryotic genomes. Proceedings of the Mississippi Academy of Sciences seventy-first annual meeting. Poster. Feb 22nd-23rd, 2007, Mississipi State University, MS.
  • Cohly D, Cole Z, Isokpehi R, Rajnarayanan R, Cohly HHP (2007) Photochemical & redox control of hydrogen gas production in cyanobacteria. Mississippi Academy of Sciences, Seventy-First Annual Meeting. Journal of the Mississippi Academy Sciences 1: 52
  • Cohly HHP, Cohly D, Isokpehi RD and Rajnarayanan RV (2007) Is Aquaporin a Natural Receptor for Anthrax Protective Antigen? Session 3: Computational Biology and Bioinformatics. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society held at the University of New Orleans (February 1-3, 2007).
  • Cole Z, Cohly D, Isokpehi R, Rajnarayanan R, Cohly HHP (2007) Relationship between the number of aquaporins and hydrogen gas production in cyanobacteria. Mississippi Academy of Sciences, Seventy-First Annual Meeting. Journal of the Mississippi Academy Sciences 1: 53
  • Cooksey A.M., M.D. Koter, A. Corzo, T.S. Cummings, M.T. Kidd and S.C. Burgess 2007. Quantitative serum proteomics of a tryptophan depleted diet using 18O labeling and a RuBisCO internal standard. Proceedings of the Mississippi Academy of Sciences seventy-first annual annual meeting. Poster. Feb 22nd-23rd, 2007, Mississipi State University, MS.
  • D. Peddinti, B. Nanduri, A. Kaya, J.Feugang, E.Memili, S. C. Burgess. 2007. Proteomics and systems biology of bovine male fertility. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007.
  • Debarati Paul, Susan Bridges, Shane Burgess, Todd French, Yoginder Dandass, and Mark Lawrence. Draft genome sequence of biodiesel producing Oligotropha carboxidovorans OM5 Mississippi State University Biofuels Conference, August 27, 2007.
  • Deng Y, Development of Classifiers on Hamner Lung Tumor data set (05+06) using different classification methods, The 7th MAQC project face-to-face meeting, May 24-25, Cary, North Carolina.
  • Deng Y, Puneet B, Identification of lipid markers of prostate cancer using lipid profiling, Letter Day of University of Southern Mississippi, Aug. 31, Hattiesburg, Mississippi
  • Diehl, R. H., W. Barrow, and J. Buler. 2007. Habitat-migrant use along the gulf coast: a radar perspective. Southeast Partners-in-Flight Conference. Memphis, Tennessee. 7-9 February.
  • F. M. McCarthy, S. C. Burgess, N. Wang,and S. M. Bridges. Cattle/Sheep Genomes Workshop "AgBase: Enabling Functional Genomics Analysis in Ruminants". 2007. Avian Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • F. M. McCarthy, S. C. Burgess, N. Wang and S. M. Bridges. Plant-Associated Microbe Gene Ontology (PAMGO) / Institute of Digital Biology – AgBase. 2007. Joint presentation from Cornell University and MSU IDB. Avian Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • Habib T, Deng Y, SVM based prediction for subcellular location of proteins using amino acid pair composition, Proceeding of IEEE BIBE 2007 (accepted).
  • Habib T, Deng Y, SVM based prediction for subcellular location of proteins using amino acid pair composition, The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • Hongbo Zheng, Fang Yu Yueh, Markandey Tiwari, Shane Burgess, Jagdish P Singh . Laser Induced Breakdown Spectroscopy: Application to Tissue Analysis. North American Symposium on Laser Induced Breakdown Spectroscopy (NASLIBS) Conference. Oct 8-10, 2007, New Orleans, LA, USA.
  • Isokpehi RD, Cohly HHP, Williams BS, Palm D, Davids BJ, Birkeland SR, Cipriano MJ, Preheim SP, Gillin FD, Svard SG, and McArthur AG (2007) Prioritized cyst-upregulated genes from the Giardia lamblia genome. Session 3: Computational Biology and Bioinformatics. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society held at the University of New Orleans (February 1-3, 2007).
  • Isokpehi RD. (2007) Data mining of malaria parasite gene expression for possible translational research. Methods of Microarray Data Analysis V. pp 1-10.
  • Kumar S, Buza J, Nanduri B and S. C. Burgess 2007. Modelling of CD30High lymphomas using Marek’s disease in chicken as a natural animal model. Proceedings of the Mississippi Academy of Sciences seventy first annual meeting. Oral. Feb 22nd-23rd, 2007, Mississippi State University, MS.
  • Li P, Zhang C, Deng Y, Comparison of computational approaches for modeling gene regulatory networks, The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • Li, P., Chaoyang Zhang and Youping Deng, Comparison of Computational Approaches for Modeling Gene Regulatory Networks, The Forth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society. (MCBIOS’07), New Orleans, Feb. 1-3, 2007.
  • M. Eddy, D. Kunec, S. C. Burgess. Identification of herpesvirus-host protein interactions using sequential peptide affinity purification and mass spectrometry. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • M.L. Lawrence, S. C. Burgess, B. Nanduri and S. M. Bridges. Experimental annotation of bovine respiratory disease pathogen genomes by protegenomic mapping. Microbial Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • Mao J, Habib T, Kang B, Ming S, Deng Y, Transcriptome profiling of Saccharomyces cerevisiae mutants lacking C2H2 zinc finger proteins, The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • McCarthy F.M., Wang N., Bridges S.M. and Burgess S.C. "Welcome To GO: A GO User’s Retrospective. 2007. Avian Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • Murray JM, Cohly HHP, Rajnarayanan RV, Isokpehi RD (2007) AQP1 and AQP4: Comparative gene structures of human, mouse, rat and zebrafish orthologs. Poster Presentation at the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, February 1-3, 2007.
  • Nan Wang, Ranjit Kumar, Mark Lawrence, Shane Burgess, Todd French, Yoginder Dandass, and Susan Bridges. Proteogenomic mapping for improved annotation of genomes for biofuels production. Mississippi State University Biofuels Conference, August 27, 2007.
  • P. Antin, S.C. Burgess, C. Schmidt, S. M. Bridges, F. M. McCarthy, R. Lader, G. Sheng, L. Stein, Jerry Dodgeson, O. Tassey, O. Pourquie. (All equal contributors). BirdBase: Proposal for a model Organism Database.2007. International Chick Meeting. Oral. 11-14 April, Barcelona, Spain.
  • Peddinti. D, B. Nanduri, E. Memili and S. C. Burgess. 2007. Understanding bovine germinal vesicle oocyte and cumulus development-A systems biology approach. Proceedings of the Mississippi Academy of Sciences seventy-first annual meeting. Poster. Feb 22nd-23rd, 2007, Mississippi State University, MS.
  • Pirooznia M, Deng Y, Efficiency of hybrid normalization of microarray gene expression: a simulation study, The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • Pirooznia M, Deng Y, Efficiency of hybrid normalization of microarray gene expression: A simulation study. AINA Workshops (1) 2007: 739-744
  • Pirooznia M, Gong P, Yang K, Perkins EJ, Deng Y, Analysis and functional annotation of expressed sequence tags from the Earthworm (Eisenia fetida). The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • Pirooznia M, Rawat A, Yang JY, Perkins EJ, Deng Y, An effective Interwoven loop design application for two-channel microarray experiments, Proceeding of IEEE BIBE 2007 (accepted).
  • Pirooznia M, Deng Y, A comparative study of differential machine learning methods on microarary gene expression data. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • R Kumar, B. Nanduri, S.C. Burgess, M.L Lawrence. Tiling array analysis of Streptococcus pneumonia TIGR4 response to in vitro iron restriction. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • Rajendran A, Li P, Zhang C, Deng Y, Parallel implementation of Multi-class SVM and its application for classifying gene expression data. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • Rajendran KA, Li P, Zhang C and Deng Y, Parallel Training of Multi-class Support Vector Machines Using Sequential Minimal Optimization, Proceedings of International Conference on Machine Learning; Models, Technologies and Applications (MLMTA’07), pp. 31-37.
  • Rajendran, A., Li Peng, Chaoyang Zhang and Youping Deng, Parallel Implementation of Multi-class SVM and its application for Classifying Gene Expression Data, The Forth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society. (MCBIOS’07), New Orleans, Feb. 1st-3rd, 2007.
  • Rajendran, A., P. Li, C. Zhang, and Y. Deng, Parallel Training of Multi-class Support Vector Machines Using Sequential Minimal Optimization, Proceedings of International Conference on Machine Learning; Models, Technologies and Applications (MLMTA’07).
  • Rico.Cohly HHP, Isokpehi RD Rajnarayanan RV (2007) Inhibitors of aquaporins as novel anti-cancer drugs. 3rd Annual National Symposium on Prostate Cancer. Clark Atlanta University, Atlanta GA, March 19-20, 2007
  • S. C. Burgess, F. M. McCarthy, N. Wang,and S. M. Bridges. AgBase: Facilitating Analysis of Chicken Functional Genomics Datasets. 2007. Avian Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • S. C. Burgess, F. M. McCarthy, N. Wang,and S. M. Bridges. Hypothesis-driven data modeling from GO using the AgBase tools. 2007. Avian Genomes Workshop, Plant and Animal Genome XV Conference, January 13-18, 2007. San Diego, California.
  • S. Kumar, J. J. Buza and S.C. Burgess. 2007. Cytokine profiles in Marek’s disease: lymphoma resistant vs susceptible genotypes. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • S.C. Burgess, S. M. Bridges, F. M. McCarthy and N. Wang. ChickGO@AgBase. International Chick Meeting. 2007. Oral. 11-14 April, Barcelona, Spain.
  • Shane Burgess, Susan Bridges Fiona McCarthy, Nan Wang. 2007. ChickGO @ AgBase: AN UPDATE AND PRIMER. 2007. International Chick Genome Meeting: the chick as a model organism: genes, development and function 11-14 April, Barcelona, Spain.
  • Susan Bridges, Nan Wang, Teresia Buza, Fiona mccarthy, Shane Burgess. 2007. Experimental structural annotation of the chicken genome using proteogenomic mapping. International chick genome meeting: the chick as a model organism: genes, development and function 11-14 April, Barcelona, Spain.
  • T. Buza, F.M. McCarthy, N. Wang, S.M. Bridges, S.C. Burgess. 2007. Measurement of Gene Ontology Annotation Quality in Eukaryotes. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • Thodima VJ, Deng Y, Structural evolution of the GAPDH-like C-terminal domain (CTD) superfamily. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Feb. 1-3, 2007, New Orleans, Louisiana.
  • van den Berg B.H.J., Lamont S.J, Burgess S.C. Genetic resistance to Salmonella in chicken; a proteomic puzzle. Proceedings of the Mississippi Academy of Sciences 71st annual meeting, Starkville, Mississippi, United States, February 21-23, 2007
  • van den Berg, B.H.J., McCarthy, F.M., Burgess, S.C., Annotation and modeling of a 13K chicken cDNA microarray. 1st annual CVM College Research Day, Mississippi State University, Starkville, Mississippi, United States, August 23, 2007
  • Yang JY, Yang MQ, Niemierko A and Deng Y, Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy, Proceeding of IEEE BIBE 2007 (accepted).
  • Yoginder Dandass, Shane Burgess, Mark Lawrence, Todd French, Susan Bridges. Acceleration of gene annotation pipelines using configurable hardware. Mississippi State University Biofuels Conference, August 27, 2007.
  • Zeng XQ, Li GZ, Deng Y, Yang MQ and Yang JY, Tumor Classification by Integrating Partial Least Squares based Dimension Reduction with Irrelevant Gene Elimination. Proceeding of IEEE BIBE 2007 (accepted).
  • Zhang C, Dargan S, Lan H and Deng Y, Web-based Information Retrieval with Local and Global Link Analysis. Information and Knowledge Engineering (IKE’07) Proceedings of International Conference on Information and Knowledge Engineering (IKE’07), pp 117-123
  • Zhang, C, S. Dargan, H. Lan, and Y. Deng, Web-based Information Retrieval with Local and Global Link Analysis, Proceedings of International Conference on Information and Knowledge Engineering (IKE’07)

2006

  • Amanda M. Cooksey, Marek D. Koter, Alejandro Corzo, Timothy S. Cummings, Michael T. Kidd, Shane C. Burgess. 2006. Quantitative serum proteomics of a tryptophan depleted diet using 18O labeling and a RuBisCO internal standard. 7th annual Phi Zeta Research Day of the Omega Chapter of Phi Zeta sponsored by Novartis Animal Health US Inc.
  • B. Nanduri, S. C. Burgess, C. R. Boyle, L. A. Shack and M. L. Lawrence. 2006. Transcription profiling of the Pasteurella multocida response to sub-minimum inhibitory concentrations of three antibiotic classes using microarrays. 106th American Society for Microbiology General Meeting, Orlando, FL.
  • Bennett, M., Julie Stone, Chaoyang Zhang, A Scalable Parallel HITS Algorithm for Page Ranking, Proceedings of the HPCTA06 Symposium of IMSCCS’06. Published by IEEE Computer Society, ISBN: 0-7695-2581-4. pp. 437-442.
  • Bindu Nanduri, Shane C. Burgess and Edward B. Allen. 2006. Software applications for integration and analysis of mass spectroscopy data. 54th American Society for Mass Spectrometry Conference Seattle, Washington, USA
  • Bridges S.M., McCarthy F.M., Wang N., Magee G.B., Nanduri B. and Burgess S.C. (2006). The AgBase GO Annotation Tools. International Gene Ontology Users Meeting. 10 September, 2006. Seattle, Washington, USA..
  • Bridges, S. M., F. M. McCarthy, M. L. Lawrence, B. Nanduri, D. Kunec, A. M. Cooksey, A. Corzo, M. D. Koter, J. J. Buza, B. H. J. van den Berg, N.
  • Wang, and S. C. Burgess. 2006. High throughput non-electrophoretic proteomics and Gene Ontology for modeling biological function in chicken, cow and channel catfish research. Proteomics Workshop, Plant and Animal Genome XIV Conference, January 14-18, 2006. San Diego, California.
  • Bridges, S. M., N. Wang, F. M. McCarthy, and S. C. Burgess. 2006. The Gene Ontology and the chicken genome: attributes in search of a product. International Workshop on Chicken genomics & development. May 7-10, 2006. Cold Spring Harbor Laboratories, NY.
  • Bridges, S., F. M. McCarthy, N. Wang, G. B. Magee, B. Nanduri, and S. C. Burgess. 2006. The AgBase GO annotation tools. GO Consortium User Meeting September 10, 2006, Seattle, USA.
  • Buler, J. J., F. R. Moore, R. H. Diehl, and S. Woltmann. 2006. Multi-scale view of habitat use by landbirds during migratory stopover. 4th North American Ornithological Conference. Veracruz, Mexico. 3 – 7 October.
  • Buler, J., R. H. Diehl, and F. R. Moore. 2006. Application of WSR-88D to quantify bird distributions during migratory stopover. Applying radar technology to migratory bird conservation and management: strengthening and expanding a collaborative effort – workshop. Albuquerque, New Mexico. 24-26 October.
  • Buza, J. J., L. A. Shack, and S. C. Burgess. 2006. Modeling the functional genome of neoplastic transformation in Marek’s disease. 4th International Workshop on the Molecular Pathogenesis of Marek’s Disease Virus University of Delaware. August 4-8, 2006.
  • Buza, T., D. Peddinti, B. McGee, S. Bridges, F. M. McCarthy, and S. C. Burgess. 2006. Chicken Gene Nomenclature based on the nearest Human Orthologs. 4th annual MSU Graduate Student Association Research Symposium.
  • Chamali L. Thanthiriwatte, Dusan Kunec, Susan M. Bridges ,Bindu Nanduri and Shane Burgess. 2007. DecoyPepFilter: A Tool for Validation of Peptide Identifications from Mass Spectrometry. The Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS). March 2nd-4th 2006, Baton Rouge, Louisiana.
  • Cohly HHP, Isokpehi RD, Varadharajan S, Sims J and Rajnarayanan RV (2006) Ionic Control of Water Transport in Aquaporins. Tenth Research Centers in Minority Institutions (RCMI) International Symposium on Health Disparities December 13-16, 2006, San Juan, Puerto Rico.
  • Cohly HHP, Rajnarayanan RV and Isokpehi RD (2006) Polar trafficking of AQP2 controls DIABETES (NDI). Fifth Annual Conference on Eliminating Health Disparities in Mississippi (Diabetes and Obesity) October 19, 2006.
  • Cohly HHP, Rajnarayanan RV, and Isokpehi RD (2006) Compartmentalization of aquaporins in the human intestine (PA-14). Third International Symposium on Recent Advances in Environmental Health Research, September 17-20, 2006.
  • Cooksey, A. M., N. Wang, N. Momen, S. Doane, S. Bridges, and S. C. Burgess. 2006. Identifying biomarkers predictive of performance under stress. Inaugural Institute for Neurocognitive Science and Technology Research Forum
  • Cooksey, A. M., N. Wang, N. Momen, S. Doane, S. Bridges, and S. C. Burgess. 2006. The human performance plasma proteome. 4th annual MSU Graduate Student Association Research Symposium.
  • D. Chan, S. C. Burgess, and S. M. Bridges. 2006. An Ensemble Method for Identifying Robust Features for Biomarker Identification. Proceedings of the International Workshop on Feature Selection for Data Mining:Interfacing Machine Learning and Statistics. Bethesda, Maryland.
  • Diana Chan, Susan Bridges, Shane Burgess. ,2006. An Ensemble Method for Identifying Robust Features for Biomarker Identification. International Workshop on Feature Selection for Data Mining: Interfacing Machine Learning and Statistics,April 22, Bethesda, Maryland
  • Diehl, R. H. 2006. Bird strike mortality and wind energy. Wind Energy Development and Wildlife workshop, North American Wildlife and Natural Resources Conference. Columbus, Ohio. 20 – 21 March .
  • Diehl, R. H. 2006. Comments on the radar biology workshop: view from a research perspective. Applying radar technology to migratory bird conservation and management: strengthening and expanding a collaborative effort – workshop. Albuquerque, New Mexico. 24-26 October.
  • Diehl, R. H. 2006. Weather as a hazard to migratory birds. 4th North American Ornithological Conference. Veracruz, Mexico. 3 – 7 October.
  • Diehl, R. H., R. K. Felix, and J. M. Ruth. 2006. Regional structure in migratory patterns across the southwest. Applying radar technology to migratory bird conservation and management: strengthening and expanding a collaborative effort – workshop. Albuquerque, New Mexico. 24-26 October.
  • Diehl, R., F. Moore, J. Buler, W. Barrow, Z. Nemeth, M. Hughes. 2006. Understanding the impact of hurricanes on migratory birds: a scale dependent approach. 91st Annual Meeting of the Ecological Society of America. Memphis, Tennessee. 6-11 August.
  • Dusan Kunec, Bindu Nanduri, Larry A. Hanson, Shane C. Burgess. 2006. Experimental annotation of the Channel Catfish Herpesvirus genome. 54th American Society for Mass Spectrometry Conference Seattle, Washington, USA.
  • Erdogan Memili, Divyaswetha Peddinti, Hakan Sagirkaya and Shane C Burgess.. 2006. Descriptive proteomics of bovine oocytes and cumulus cells. 39th Annual Meeting of the Society for the Study of Reproduction, Omaha, Nebraska.
  • F. M. McCarthy, Burgess, S. C., N. Wang, B. Nanduri, and S. M. Bridges. 2006. AgBase: Facilitating Functional Genomics in Agricultural Species. Conference of Research Workers in Animal Diseases, December 3-5, Chicago, IL.
  • Felix, R. K. and R. H. Diehl. 2006. Patterns aloft of songbird migrants in the southwestern United States. 4th North American Ornithological Conference. Veracruz, Mexico. 3 – 7 October.
  • Felix, R., R. H. Diehl, and F. R. Moore. 2006. Use of weather radar in studies of bird migration in the southwest: overcoming radar beam occultation. 70th Annual Meeting of the Mississippi Academy of Sciences. Vicksburg, Mississippi. 22 – 24 February.
  • G. Bryce Magee, Bindu Nanduri, Susan M. Bridges, Shane Burgess, and W. Paul Williams. 2007. ProtQuant: A Tool for the Label-Free Quantification of Shotgun Proteomics Data. The Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS). March 2nd-4th 2006, Baton Rouge, Louisiana.(Second place in the student poster competition).
  • Gu, Junfeng, R. Diehl, and D. Ali. 2006. Radar data processing and visualization for biological targets. 12th International Conference on Industry, Engineering, and Management Systems. Cocoa Beach, Florida. 13 – 15 March.
  • Hongbo Zheng, H., F. Y. Yueh, S. C. Burgess, and J. P. Singh. 2006. Laser Induced Breakdown Spectroscopy-Application to Tissue Analysis. Proceedings of the Laser Applications to Chemical, Security and Environmental Analysis (LACSEA2006), Optical Society of America (OSA) Topical Meeting , February 5-9, Nevada.
  • Imamoglu, H., C. Hui, B. Nanduri, S. C. Burgess, and G. Thomas. 2006. Streptavidin hydrogels for microfluidic-based transcription factor assays. American Electrophoresis Society Annual Meeting. Augusta, GA.
  • Isokpehi RD, Cohly HHP and Tchounwou PB (2006) Text Mining and Ontology Development for Biomedical Discoveries in Environmental Health and Health
  • Disparities. Tenth Research Centers in Minority Institutions (RCMI) International Symposium on Health Disparities December 13-16, 2006, San Juan, Puerto
  • Isokpehi RD, Rajnarayanan RV, Cohly HHP (2006) Density of glycocalyx determines site specific localization of aquaporins in the kidney? (PA-20). Third International Symposium on Recent Advances in Environmental Health Research, September 17-20, 2006.
  • Klaassen, I., B. H. J. van den Berg, W. E. Holmes, and S. C. Burgess. 2006. Increasing proteome coverage using High Performance Liquid Chromatography. Fontys University international student presentation day, Nerherlands, 2006.
  • Kunec D, Nanduri, B, Burgess, S C. 2006. A Probability-based Scoring Method for Experimental Genome Mining by Proteomics.EPSCoR National Conference 2006. November 7-10, Lexington, KY.
  • Kunec, D., B. Nanduri, and S. C. Burgess. 2006. Genome mining by proteomics: experimental annotation of a herpesvirus 4th annual MSU Graduate Student Association Research Symposium.
  • M.B.Dail , S.C.Burgess, M.K.Ross and J.Chambers. 2006. Effects of Dieldrin and Phenobarbital on the Levels of Messenger RNA of Toxicologically Important Genes. 45th Annula Meeting of the Society for Toxicology, March 5-9, San Diego, DA.
  • McCarthy F.M., Bridges S.M. and Burgess S.C. (2006). Increasing GO annotation through community involvement. International Gene Ontology Users Meeting. 10 September, 2006. Seattle, Washington, USA.
  • McCarthy, F. M., N. Wang, T. J. Buza, D. Peddinti, S. M. Bridges, and S. C. Burgess. 2006. AgBase and the Ruminant Genomes: GOing towards Greener Pastures. Cattle/Sheep Workshop, Plant and Animal Genome XIV Conference, January 14-18, 2006. San Diego, California.
  • McCarthy, F. M., N. Wang, B. Nanduri, S. M. Bridges, and S. C. Burgess. 2006. Proteomics and Gene Ontology: Analyzing Function in a Post-Genomic World. 11 October 2006. Queensland Government, Department of Primary Industries and Fisheries. Australia.
  • McCarthy, F. M., S. Bridges, and S. C. Burgess. 2006. Increasing GO annotation through community involvement GO Consortium User Meeting September 10, 2006, Seattle, USA.
  • N. Wang, F. M. McCarthy, S. C. Burgess, and S. M. Bridges. 2006. AgBase GO Toolkit: A Gene Ontology Annotation Toolkit for Large Scale Protein Datasets. 2006. 3rd Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, March 2-4, Baton Rouge, LA.
  • Nevels C, Bland C and Isokpehi RD (2006) Predicting MEDLINE Abstracts Relevant to Salt Tolerance in Plants. Poster K-16 2006 Intelligent Systems for Molecular Biology Conference, August 6-10, 2006
  • Nieuwenhuizen, I. F., D. Kunec, and S. C. Burgess. 2006. Sequential Peptide Affinity (SPA)-tagging and purification of Channel Catfish Virus (CCV) protein complexes. Fontys University final examination presentation, Holland.
  • Peddinti, D., and Buza, T. 2006. GO Annotation Camp: Manual Curation of Research Literature. July 12-14. Stanford University, Stanford, CA
  • Peddinti, D., B. H. J. van den Berg, E. Memilli, H. Sagirkayan, F. M. McCarthy, B. Nanduri, and S. C. Burgess. 2006. Bovine oocyte and cumulus cell proteomes and their functional implications. 4th annual MSU Graduate Student Association Research Symposium.
  • Pflueger, M., D. Kunec, and S. C. Burgess. 2006. Quantifying the effect of CD30 signaling via NF-?B in the neoplastically transformed cells on Marek’s Disease Virus Meq transcription. Merk-Merial Veterinary Student Summer Research Symposium, Baton Rouge, LA.
  • Qiao, J., Yang Ye, and Chaoyang Zhang, Parallelization of Similarity Search in Large Time Series Databases, Proceedings of the High Performance Technology and Applications (HPCTA) Symposium of IMSCCS’06. Published by IEEE Computer Society, ISBN: 0-7695-2581-4. pp. 355-362.
  • Rajendran A, Zhang C, Li P, Deng Y, Efficient support vector machines through parallel computing, 2006, Mississippi Academy of Sciences.
  • Rajnarayanan RV, Cohly HHP, and Isokpehi RD (2006) Glycocalyx targeting of AQP7 controls Obesity. Fifth Annual Conference on Eliminating Health Disparities in Mississippi (Diabetes and Obesity) October 19, 2006.
  • Rajnarayanan RV, Isokpehi RD, Cohly HHP (2006) Differential compartmentalization, function and localization of aquaporins 1, 2 & 3 in the human kidney. (PA-17). Third International Symposium on Recent Advances in Environmental Health Research, September 17-20, 2006.
  • S. C. Burgess McCarthy, F. M., N. Wang, T. J. Buza, D. Peddinti, and S. M. Bridges. 2006. Where to GO for chicken gene ontology. Avian Genomes Workshop, Plant and Animal Genome XIV Conference, January 14-18, 2006. San Diego, California.
  • Shim, J. W., S. C. Burgess, and S. H. Elder. 2006. Induction of fibrocartilaginous metaplasia in tenocytes by hydrostatic compression. 52nd annual meeting of the Orthopaedic Research Society, New Orleans.
  • Shim, J. W., S. C. Burgess, and S. H. Elder. 2006. Induction of Transdifferentiation in Pellet Cultured Tenocytes to Cartilaginous Phenotype under Cyclic
  • Hydrostatic Pressure – Oral presentation. World Congress on Medical Physics and Biomedical Engineering 2006, Seoul, Korea Aug. 27 to Sep. 1, 2006. Selected as one of 10 finalists from over 100 entries for the Young Investigator’s Competition Award.
  • Simmons S and Isokpehi RD (2006) Alternative Splicing Events of Stress Responsive Genes encoding Universal Stress Protein Domains in Arabidopsis and Rice. Poster A-17. 2006 Intelligent Systems for Molecular Biology Conference, August 6-10, 2006
  • Simmons S, Isokpehi RD (2006) Alternative splicing events of genes in Arabidopsis and Rice encoding the universal stress protein domain. LSMAMP National Research Conference. November 17, 2006, Jackson, Mississippi
  • Sojda, R., J. Paxton, R. Mead, R. Angryk, R. H. Diehl, and R. Klaver. 2006. Can artificial intelligence be used to detect birds in NEXRAD data? Applying radar technology to migratory bird conservation and management: strengthening and expanding a collaborative effort – workshop. Albuquerque, New Mexico. 24-26 October.
  • Susan Bridges, Rowena Kelley, Gregory Bryce Magee, Nan Wang, Shane Burgess, Dawn S. Luthe, and W. Paul Williams. 2006. Annotation and computational analysis of maize proteome and genome expression datasets. Aflatoxin/Fumonisin and Fungal Workshops, October 16-18, 2006, Dallas, TX.
  • Thanthrige-Don, N., M. F. Abdul-careem, P. Shewen, J. Lumstdem, J. Caswell, S. C. Burgess, and S. Sharif. 2006. Characterization of protein expression in chicken spleen in response to Marek’s disease virus infection by two-dimensional gel electrophoresis. 4th International Workshop on the Molecular Pathogenesis of Marek’s Disease Virus University of Delaware. August 4-8.
  • Thodima V, Pirooznia M, Deng Y, RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers. March 2-4, 2006, Baton Rouge, Louisiana.
  • Thomas, G., and S. C. Burgess. 2006. Microfluidic Analysis for Transcription Factor Binding Studies. Southeast Regional Meeting of the National Organization of Black Chemists and Chemical Engineers, Atlanta, GA.
  • Thomas, G., and S. C. Burgess. 2006. Microfluidic Hydrogels for Bioanalytical Applications: Metabolite Analysis and Transcription Factor Assays. Eastern Analytical Symposium, Somerset, NJ.
  • van den Berg, B. H. J., I. Klaassen, S. Lamont, H. Zhou, and S. C. Burgess. 2006. Non-electrophoretic quantitative proteome mapping of Salmonella response in chicken. 4th annual MSU Graduate Student Association Research Symposium.
  • van den Berg, B. H. J., S. J. Lamont, W. E. Holmes, and S. C. Burgess. 2006. Novel non-electrophoretic proteomics for identifying resisantce genes in a Salmonella model. 231st American Chemical Society National Meeting & Exposition. Atlanta, GA, March 26-30, 2006.
  • William S. Sanders, Susan A. Bridges, Fiona McCarthy, and Shane C. Burgess. 2007. PepFly: A Tool for the Prediction of Peptides Observed by Mass Spectra. The Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS). March 2nd-4th 2006, Baton Rouge, Louisiana.
  • Yang K, Deng Y, Zhang C, and Elasri M, Identification of New Members of Hydrophobin Family Using Primary Structure Analysis. March 2-4, 2006, Baton Rouge, Louisiana.
  • Yang, K., Chaoyang Zhang and Youping Deng, New Members Identified in Hydrophobiin Family as Potential Polymer Materials by Primary Structure Analysis, Poster for at the 3rd Annual MidSouth Computational Biology and Bioinformatics Society (MCBIOS’06).
  • Zhang C, Li P, Rajendran A and Deng Y, Parallel Multicategory Support Vector Machines (PMC-SVM) for Classifying Microcarray Data. March 2-4, 2006, Baton Rouge, Louisiana.
  • Zhang, C., Peng Li and Youping Deng, Parallel Support Vector Machines for Classifying MIcroarray Data, The Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society. (MCBIOS’06), Baton Rouge, March 2nd-4th, 2006.
  • Zhang, C., Peng Li, Arun K. Rajendran, and Youping Deng Parallel Support Vector Machine for Classifying Microarray Data, Proceedings of IMSCCS’06. Published by IEEE Computer Society, ISBN: 0-7695-2581-4. pp. 110-115.

2005

  • Buler, J. J., F. R. Moore, and R. H. Diehl. 2005. Landscape-scale habitat use by landbirds during migratory stopover near an ecological barrier as revealed by weather radar and ground surveys. WOS and AFO Joint Meeting. Beltsville, Maryland. 21-24 April.
  • Buler, J. J., F. R. Moore, and R. H. Diehl. 2005. Landscape-scale habitat use by landbirds during migratory stopover near an ecological barrier. 123rd Meeting of the American Ornithologists’ Union. Santa Barbara, California. 23 – 27 August
  • Buler, J. J., R. H. Diehl, and F. R. Moore. 2005. Mapping stopover areas of migrating birds along the northern coast of the Gulf of Mexico using weather radar. Southeastern Partners in Flight annual meeting. McAllen, Texas. 16 – 18 February.
  • Deng Y, Chokalingam V, Elasri MO and Zhang C, Improved MCC for Clustering Of Gene Expression Data, 13th International Conference on Intelligent Systems for Molecular Biology, Detroit, Michigan, USA, June 24-29, 2005
  • Deng Y, Chokalingam V, Zhang C, Markov chain correlation based clustering of gene expression data. Proceeding of International Conference on Information Technology Coding and Computing, 2005, 750-755(indexed in DBLP).
  • Deng Y, Kayarat D, Elasri MO, Brown SJ, Microarray data clustering using particle swarm optimization K-means algorithm. Proceeding of Eighth Joint Conference on Information Sciences (JCIS 2005), Salt Lake City, July 2005, 1730-1734.
  • Deng, Y., Chokalingam, V. and Zhang, C., Markov Chain Correlation Based Clustering of Gene Expression Data, Proceedings of the International Conference on Information Technology: Coding and Computing (IEEE ITCC 2005), Information Technology in Bioinformatics and Biomedical Computing, Las Vegas, April, 2005. Published by IEEE Computer Society. pp. 1-6. 2005.
  • Deng, Y., Venkatachalam Chokalingam, Chaoyang Zhang, Mohamed O. Elasri, Clustering Of Gene Expression Data By Improved Markov Chain Correlation, 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB’05), Detroit, Michigan, USA, June 24-29, 2005.
  • Isokpehi RD and Sarpong DF (2005). Binary-encoded single nucleotide polymorphism annotation of environmental response human genes. Second International Symposium on Recent Advances in Environmental Health Research, September 2005.
  • Kaushik N, Zhang C, Murali B, Nagarajan V, Lakhera S and Deng Y, Parallel virtual screening for prediction of antimicrobial activity using Fourier transforms. Proceeding of PDPTA’05 – The 2005 International Conference on Parallel and Distributed Processing Techniques and Applications, Las Vegas, Nevada, USA, June 2005, 1355-1362 (indexed in DBLP).
  • Kaushik, N. C. Zhang, et. al., "Parallel Virtual Screening for Prediction of Antimicrobial Activity Using Fourier Transforms," Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’05). Published by CSREA Press.
  • Kaushik, N., Chaoyang Zhang, et. al., "Parallel Virtual Screening for Prediction of Antimicrobial Activity Using Fourier Transforms," Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’05).
  • Lu J, Xie L, Sylvester J, Chen J, Deng Y, Yang SS, Wang W, Profiling gene expression in weight control mice via calorie restriction and exercise. AAA Annual Meeting at EB 2005, April 2-6, San Diego, CA
  • Nagarajan V, Kaushik N, Murali B, Zhang C, Lakhera S, Elasri MO and Deng Y, A fourier transformation based method to mine peptide space for antimicrobial activity. December 2-4, 2005. Auburn University, Auburn, Alabama.
  • Raveendran NN, Pondugula SR, Deng Y, Chen J, Marcus DC. Expression of ion transport-related genes in semicircular canal duct (SCCD) epithelium. Experimental Biology 2005, San Diego.
  • Raveendran NN, Pondugula SR, Deng Y, Chen J, Marcus DC. Microarray Analysis of Ion Transport-Related Genes in Semicircular Canal Duct Epithelium. Assoc. Res. Otolaryngol. 2005
  • Yang, Y., Zhang, C., et. al., Parallel computation of sensitivity analysis in optical tomography, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’05).
  • Yang, Y., Zhang, C., et. al., Parallel computation of sensitivity analysis in optical tomography, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’05). CSREA Press, vol. I, 1042-1048, 2005.
  • Zhang, C., Lan, H. and Estrade, B. D., Parallel SOR iterative algorithms and performance evaluation on a Linux cluster, Proceedings of International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’05). Published by CSREA Press. pp. 263-269.

 

 

]]> http://mcbc-mississippi.org/?feed=rss2&p=46 0 Publications http://mcbc-mississippi.org/?p=44 http://mcbc-mississippi.org/?p=44#comments Sun, 26 Apr 2009 22:38:52 +0000 admin http://mcbc-mississippi.org/?p=44 2007 | 2006 | 2005

 

2007

  • Bridges, S. M., G. B. Magee, N. Wang, W. P. Williams, S. C. Burgess, and B. Nanduri. 2007. ProtQuant: A Tool for the Label-Free Quantification of MudPIT Proteomics Data. BMC Bioinformatics In Press.
  • Buza, J. J. and S.C. Burgess. Modeling the proteome of a Marek’s disease transformed cell line: a natural animal model for CD30 over-expressing lymphomas. Proteomics, 2007. 7:1316-26.
  • Cogburn, L.A., T.E. Porter, M. Duclos, J., J. Simon, S.C. Burgess, J.J. Zhu, H.H. Cheng, J.B. Dodgeson, and J. Burnside. 2007. Functional Genomics of the Chicken – A Model Organism. Poultry Science In press.
  • Cohly D, Cole Z, Isokpehi R, Rajnarayanan R, Cohly HHP (2007) Photochemical & redox control of hydrogen gas production in cyanobacteria. Mississippi Academy of Sciences, Seventy-First Annual Meeting. Journal of the Mississippi Academy Sciences 1: 52
  • Cohly HHP, Cohly D, Isokpehi RD and Rajnarayanan RV (2007) Is Aquaporin a Natural Receptor for Anthrax Protective Antigen? Session 3: Computational Biology and Bioinformatics. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society held at the University of New Orleans (February 1-3, 2007).
  • Cohly HHP, Isokpehi RD Rajnarayanan RV (2007) Inhibitors of aquaporins as novel anti-cancer drugs. 3rd Annual National Symposium on Prostate Cancer. Clark Atlanta University, Atlanta GA, March 19-20, 2007
  • Cole Z, Cohly D, Isokpehi R, Rajnarayanan R, Cohly HHP (2007) Relationship between the number of aquaporins and hydrogen gas production in cyanobacteria. Mississippi Academy of Sciences, Seventy-First Annual Meeting. Journal of the Mississippi Academy Sciences 1: 53
  • Dail, M. B., S. C. Burgess, E. C. Meek, J. Wagner, J. Baravik, and J. E. Chambers. 2007. Spatial Distribution of CYP2B1/2 Messenger RNA within the Rat Liver Acinus following Exposure to the Inducers Phenobarbital and Dieldrin. Toxicological Sciences. .99 (1): 35-42.
  • Deng Y, Xu H, Riedel H, PSM/SH2-B distributes selected mitogenic receptor signals to distinct components in the PI3-kinase and MAP kinase signaling pathways. J. Cell. Biochem. 2007, 100:557-573.
  • Diana Chan, Susan Bridges, Shane Burgess, An Ensemble Method for Identifying Robust Features for Biomarker Identification, in Computational Methods of Feature Selection , edited byHuan Liu and Hiroshi Motoda, 2007, CRC Press.
  • Gong P, Guan X1 Inouye LS, Pirooznia M, Indest KJ, Athow RS, Deng Y, Perkins EJ, Toxicogenomic Analysis Provides New Insights into Molecular Mechanisms of the Sublethal Toxicity of 2,4,6-Trinitrotoluene in Eisenia fetida. Environmental Science & Technology, 2007 (accepted)
  • Habib, T., Y. Deng and C. Zhang, SVM based prediction method for subcellular localization of proteins using amino acid and amino acid pair composition, BMC Genomics 2007 (accepted)
  • Isokpehi RD, Cohly HHP, Williams BS, Palm D, Davids BJ, Birkeland SR, Cipriano MJ, Preheim SP, Gillin FD, Svard SG, and McArthur AG (2007) Prioritized cyst-upregulated genes from the Giardia lamblia genome. Session 3: Computational Biology and Bioinformatics. The Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society held at the University of New Orleans (February 1-3, 2007).
  • Isokpehi RD. (2007) Data mining of malaria parasite gene expression for possible translational research. Methods of Microarray Data Analysis V. pp 1-10.
  • Karsi, A. and M. L. Lawrence. 2007. Broad host range fluorescence and bioluminescence expression vectors for gram negative bacteria. Plasmid 57:286-95.PMID: 17207855
  • Li, P., C. Zhang, E.J. Perkins, P. Gong, Y. Deng, Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks, BMC Bioinformatics 2007 8 (Suppl 8):S13.
  • Mao J, Habib T, Kang B, Ming S, Deng Y, Transcriptome profiling of Saccharomyces cerevisiae mutants lacking C2H2 zinc finger proteins, BMC Genomics, 2007 (accepted).
  • McCarthy FM, Bridges SM, Burgess SC. GOing from functional genomics to biological significance. Cytogenet Genome Res.2007;117(1-4):278-87. PMID: 17675869
  • McCarthy, F. M., A. M. Cooksey, and S. C. Burgess. 2007. Sequential detergent extraction prior to mass spectrometry analysis. Methods in Molecular Medicine: Proteomic analysis of membrane proteins. Humana Press. 117 (1-4):278-87.
  • McCarthy, F. M., S. M. Bridges, and S. C. Burgess. 2007. GOing from Functional Genomics to Biological Significance. Cytogenetic and Genome Research. 117 (1-4):278-87.
  • Memili E, Peddinti D, Shack LA, Nanduri B, McCarthy F, Sagirkaya H and Burgess SC. 2007. Bovine germinal vesicle oocyte and cumulus cell proteomics Reproduction 133: 11071120. PMID: 17636165
  • Memilli, E., D. Pediniti, L. A. Shack, B. Nanduri, F. M. McCarthy, H. Sagirkaya, and S. C. Burgess. 2007. Bovine germinal vesicle oocyte and cumulus cell proteomics. Reproduction. 133 (6):1107-1120.
  • Mukkamala D, Zhang Y, Oldfield E. J. Am. Chem. Soc., 129(23), 7385-7392 (2007). A Solid State 13C NMR, Crystallographic and Quantum Chemical Investigation of Phenylalanine and Tyrosine Residues in Dipeptides and Proteins.
  • Murray JM, Cohly HHP, Rajnarayanan RV, Isokpehi RD (2007) AQP1 and AQP4: Comparative gene structures of human, mouse, rat and zebrafish orthologs. Poster Presentation at the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, February 1-3, 2007.
  • Pirooznia M, Deng Y, A comparative study of differential machine learning methods on microarary gene expression data. BMC Genomics (accepted).
  • Pirooznia M, Gong P, Yang K, Perkins EJ, Deng Y, Analysis and functional annotation of expressed sequence tags from the Earthworm (Eisenia fetida). BMC Bioinformatics, (accepted).
  • Pirooznia M, Nagarajan V, Deng Y, GeneVenn A Web Application for Comparison of Gene Lists Using Venn Diagrams. Bioinformation. 2007, 1: 420-422.
  • ProtQuant: a tool for the label-free quantification of MudPIT proteomics data Susan M Bridges, G Bryce Magee, Nan Wang, W Paul Williams, Shane C Burgess and Bindu Nanduri, BMC Bioinformatics 2007, 8(Suppl 7):S24
  • Rodriguez-Osorio N, Kim IJ, Wang H, Kaya A and Memili E. (2007). Melatonin increases cleavage rate of porcine preimplantation embryos in vitro. Journal of Pineal Research. 43(3):283-8. PMID: 17803526
  • Sanders, W. S., S. M. Bridges, F. M. McCarthy, B. Nanduri, and S. C. Burgess. 2007. Prediction of peptides observable by mass spectrometry. BMC Bioinformatics In Press.
  • Scott, V. L., S. C. Burgess, L. A. Shack, N. N. Lockett, and K. S. Coats. 2007. Expression of CD134 and CXCR4 mRNA in Term Placentas from FIV-infected and Control Cats. Veterinary Immunology and Immunopathology. In press.
  • van den Berg, B. H., T. Harris, F. M. McCarthy, S. J. Lamont, and S. C. Burgess. 2007 Non-electrophoretic Differential Detergent Fractionation proteomics using frozen whole organs. Rapid Communications in Mass Spectrometry. In press. RCM-07-0391.R1
  • Welti R, Mary R., Deng Y, Shah J and Wang X, Lipidomics: ESI-MS/MS-based profiling to determine the function of genes involved in metabolism of complex lipids. In Plant Metabolomics, Basil Nikolau. ed. Kluwer Academic Publishers, New York, NY, 2007, 87-92.
  • William S. Sanders, Susan M. Bridges, Fiona M. McCarthy, Bindu Nanduri, and Shane C. Burgess, "Prediction of peptides observable by mass spectrometry applied at the experimental set level", BMC Bioinformatics 2007, 8(Suppl 7):S23
  • Zhang M, Deng Y, Tandon R, Bai C, Riedel H, Essential role of PSM/SH2-B variants in insulin receptor catalytic activation and the resulting cellular responses. J. Cell. Biochem., 2007, Jul 5.
  • Zhang Y, Oldfield E. J. Am. Chem. Soc., submitted (2007). NMR Hyperfine Shifts in Blue Copper Proteins: a Quantum Chemical Investigation.

2006

  • Betancourt, A. M., S. C. Burgess, and R. L. Carr. 2006. Effect of Developmental Exposure to Chlorpyrifos on the Expression of Neurotrophin Growth Factors and Cell-Specific Markers in Neonatal Rat Brain. Toxicol. Sci. 92:500 – 506.
  • Bindu Nanduri, Mark L. Lawrence, Carolyn R. Boyle, Mahalingam Ramkumar, and Shane C. Burgess. 2006. Effects of sub-minimum inhibitory concentrations of antibiotics on the Pasteurella multocida proteome. Journal of Proteome Research. 5: 572-580.
  • Boyko EV, Smith CM, Vankatappa T, Bruno J, Deng Y, Starkey SR, Klaahsen DL, The Molecular Basis of Plant Gene Expression During Aphid Invasion: Wheat Pto- and Pti-like Sequences Modulate Aphid-Wheat Interactions. Journal of Economic Entomology, 2006, 99:1430-1445.
  • Burgess, S. C., T. S. Cummings, A. M. T. Steegh, L. A. Hanson, D. C. Sullivan, and R. L. Nolan. 2006. Distinguishing closely-related streptogramin-resistant Enterococcus faecium: SNPs in one specific 16S-23S rRNA intergenic region. Journal of Animal and Veterinary Advances. 5 (10), 855-862.
  • Chen D, Texada DE, Duggan C, Deng Y, Redens TB, Langford MP. Caspase-3 and -7 mediate apoptosis of human Chang’s conjunctival cells induced by enterovirus 70. Virology. 2006, 347, 307-322.
  • Cohly HHP, Isokpehi RD, Varadharajan S, Sims J and Rajnarayanan RV (2006) Ionic Control of Water Transport in Aquaporins. Tenth Research Centers in Minority Institutions (RCMI) International Symposium on Health Disparities December 13-16, 2006, San Juan, Puerto Rico.
  • Cohly HHP, Rajnarayanan RV and Isokpehi RD (2006) Polar trafficking of AQP2 controls DIABETES (NDI). Fifth Annual Conference on Eliminating Health Disparities in Mississippi (Diabetes and Obesity) October 19, 2006.
  • Cohly HHP, Rajnarayanan RV, and Isokpehi RD (2006) Compartmentalization of aquaporins in the human intestine (PA-14). Third International Symposium on Recent Advances in Environmental Health Research, September 17-20, 2006.
  • Corzo, A., M. T. Kidd, W. A. Dozier, 3rd, L. A. Shack, and S. C. Burgess. 2006. Protein expression of pectoralis major muscle in chickens in response to dietary methionine status. Br J Nutr 95:703-8.
  • Deng Y, Dong Y, Brown SJ, Zhang C, An Integrated Web-Based Model for Management, Analysis and Retrieval of EST Biological Information, in H.T. Shen et al. (Eds.): Lecture Notes in Computer Science 3842, pp 931-938, Springer-Verlag Berlin Heidelberg Publishers, 2006.
  • Deng Y, Dong Y, Thodima V, Clem RJ, Passarelli L, Analysis and functional annotation of expressed sequence tags from the fall armyworm Spodoptera frugiperda. BMC Genomics 2006, 7, 264
  • Deng Y, Kayarat D, Elasri MO, Brown SJ, Microarray data clustering using particle swarm optimization K-means algorithm. Pattern Recognition and Machine Intelligence, 2006, 1: 114-119.
  • Deng Y, Ni J and Zhang C, Development of computations in bioscience and bioinformatics and its application: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB|06). BMC Bioinformatics, 2006, 7(Suppl 4):S1.
  • Diehl, R. H., J. Gu, and D. Ali. 2006. Improving ground speed and direction estimation for biological target discrimination on surveillance radar. In: Proceedings of the 12th International Conference on Industry, Engineering, and Management Systems. Cocoa Beach, Florida. 13-15 March.
  • E.A. Haygreen, P. Kaiser, S.C. Burgess, T.F. Davison. 2006. In ovo DNA immunisation followed by a recombinant fowlpox boost is fully protective to challenge with virulent IBDV. Vaccine 24:4951-4961.
  • Fiona M McCarthy, Nan Wang, G. Bryce Magee, Bindu Nanduri, Mark L. Lawrence, Evelyn Camon, David Hill, Mary E Dolan, W. Paul Williams, Dawn Luthe, Susan M Bridges and Shane C Burgess. 2006. AgBase: A Functional Genomics Resource for Agriculturally Important Species. BMC Genomics. 7(1):229
  • Hamal, K. R., S. C. Burgess, I. Y. Pevzner, and G. F. Erf. 2006. Maternal Antibody Transfer from Dams to Their Egg-yolk, Egg-white and Chicks in Two Meat Lines of Chickens. Poultry Science 85:1364-72
  • Isokpehi RD, Cohly HHP and Tchounwou PB (2006) Text Mining and Ontology Development for Biomedical Discoveries in Environmental Health and Health Disparities. Tenth Research Centers in Minority Institutions (RCMI) International Symposium on Health Disparities December 13-16, 2006, San Juan, Puerto Rico
  • Isokpehi RD, Rajnarayanan RV, Cohly HHP (2006) Density of glycocalyx determines site specific localization of aquaporins in the kidney? (PA-20). Third International Symposium on Recent Advances in Environmental Health Research, September 17-20, 2006.
  • Karsi A, Lawrence ML. Construction of genomic libraries from Flavobacterium columnare using Lucigenâs BigEasyâ„¢ Linear Cloning System. eLucidations 6:1-3, 2006.
  • Karsi A, Menanteau-Ledouble S, Lawrence ML. Development of bioluminescent Edwardsiella ictaluri for non-invasive disease monitoring. FEMS Microbiol. Lett. 260:216-223, 2006.
  • Kervern G, Pintacuda G, Zhang Y, Oldfield E, Roukoss C, Kuhn E, Herdtweck E, Basset JM, Cadars S, Lesage A, Coperet C, Emsley L. J. Am. Chem. Soc., 128(41), 13545-13552 (2006). Solid-state NMR of a paramagnetic DIAD-Fe(II) catalyst: sensitivity, resolution enhancement, and structure-based assignment.
  • Lee SR, Pharr GT, Cooksey AM, McCarthy FM, Boyd BL, Pinchuk LM. Differential detergent fractionation for non-electrophoretic bovine peripheral blood monocyte proteomics reveals proteins involved in professional antigen presentation. Dev. Comp. Immunol. 30(11):1070-83, 2006. PMID: 16566999
  • Liu D, Lawrence ML, Austin FW, Ainsworth AJ, Pace LW. PCR detection of pathogenic Leptospira genomospecies targeting putative transcriptional regulator genes. Can. J. Microbiol. 52:272-277, 2006. PMID: 16604124
  • Liu D, Lawrence ML, Gorski L, Mandrell RE, Ainsworth AJ, Austin FW. Listeria monocytogenes serotype 4b strains belonging to lineages I and III possess distinct molecular features. J. Clin. Microbiol. 44:214-217, 2006. PMID: 16390972
  • Liu D, Lawrence ML, Wiedmann M, Gorski L, Mandrell RE, Ainsworth AJ, Austin FW. Listeria monocytogenes subgroups IIIA, IIIB and IIIC delineate genetically distinct populations with varied pathogenic potential. J. Clin. Microbiol. 44:4229-4233, 2006. PMID: 17005751
  • Liu D, Swiatlo E, Austin FW, Lawrence ML. Use of a putative transcriptional regulator gene as target for specific identification of Staphylococcus epidermidis. Lett. Appl. Microbiol. 43:325-330, 2006. PMID: 16910940
  • Mao J, Mukherjee S, Zhang Y, Cao R, Sanders JM, Song YC, Zhang YH, Meints GA, Gao YG, Mukkamala D, Hudock MP, Oldfield E. J. Am. Chem. Soc., 128(45), 14485-14497 (2006). A Solid State NMR, Crystallographic and Computational Investigation of Bisphosphonates and Farnesyl Diphosphate Synthase-Bisphosphonate Complexes.
  • McCarthy FM, Bridges SM, Wang N, Magee GB, Williams WP, Luthe DS, Burgess SC. AgBase: A unified resource for functional analysis in agriculture. Nucleic Acids Research Jan;35 (Database issue):D599-603. Epub 2006 Nov 29. PMID: 17135208
  • McCarthy FM, Cooksey AM, Wang N, Bridges SM, Pharr GT, Burgess SC. Modeling a Whole Organ using Proteomics: the Avian bursa of Fabricius. Proteomics, May;6 (9):2759-71, 2006. PMID: 16596704
  • McCarthy FM, Wang N, Magee GB, Nanduri B, Lawrence ML, Camon EB, Barrell DG, Hill DP, Dolan ME, Williams WP, Luthe DS, Bridges SM, Burgess SC. AgBase: A Functional Genomics Resource for Agriculture, BMC Genomics, 2006 Sep 8;7(1):229. PMID: 16961921
  • McCarthy, F. M., A. M. Cooksey, N. Wang, S. M. Bridges, G. T. Pharr, and Burgess. S. C. 2006. Whole Organ Proteomics and Proteogenomics Using the Model Avian Genome. Proteomics 6:2759-71.
  • McCarthy, F. M., S. M. Bridges, N. Wang, G. B. Magee, W. P. Williams, D. S. Luthe, and S. C. Burgess. 2006. AgBase: a unified resource for functional genomics analysis in agriculture. Nucleic Acids Research. D599-603.
  • Nagarajan V, Kaushik N, Zhang C, Murali B, Lakhera S and Deng Y, A fourier transformation based method to mine peptide space for antimicrobial activity. BMC Bioinformatics, 2006, 7(Suppl 2):S2.
  • Nanduri B, Lawrence ML, Boyle CR, Ramkumar M, Burgess SC. Effects of sub-minimum inhibitory concentrations of antibiotics on the Pasteurella multocida proteome. J. Proteome Res. 5:572-580, 2006.
  • Nevels C, Bland C and Isokpehi RD (2006) Predicting MEDLINE Abstracts Relevant to Salt Tolerance in Plants. Poster K-16 2006 Intelligent Systems for Molecular Biology Conference, August 6-10, 2006
  • Pharr GT, Branton SL, Cooksey AM, Hanson LA, Burgess SC, Bottoms CC, McCarthy FM, Collier SD. The recognition of a vlhA protein from the F-strain of Mycoplasma gallisepticum with monoclonal antibody 6F10. Int. J. Poultry Sci. 5(8): 789-795. 2006.
  • Pharr, G. T., S. L. Branton, A. M. Cooksey, L. A. Hanson, S. C. Burgess, C. C. Bottoms, and S. D. Collier. 2006. The Recognition of a vlhA Protein from the F-Strain of Mycoplasma gallisepticum with Monoclonal Antibody 6F10. International Journal of Poultry Science 5:789-795.
  • Pirooznia M, Deng Y: SVM Classifier – a comprehensive java interface for support vector machine classification of microarray data. BMC Bioinformatics 2006, 7(Suppl 4):S25
  • Pondugula SR, Raveendran NN, Ergonul Z, Deng Y, Chen J, Sanneman JD, Palmer LG, Marcus DC. Glucocorticoid Regulation of Genes in the Amiloride-Sensitive Sodium Transport Pathway by Semicircular Canal Duct Epithelium of Neonatal Rat. Physiol Genomics. 2006, 24, 114-223.
  • Rajnarayanan RV, Cohly HHP, and Isokpehi RD (2006) Glycocalyx targeting of AQP7 controls Obesity. Fifth Annual Conference on Eliminating Health Disparities in Mississippi (Diabetes and Obesity) October 19, 2006.
  • Rajnarayanan RV, Isokpehi RD, Cohly HHP (2006) Differential compartmentalization, function and localization of aquaporins 1, 2 & 3 in the human kidney. (PA-17). Third International Symposium on Recent Advances in Environmental Health Research, September 17-20, 2006.
  • Sagirkaya H, Misirlioglu M, Kaya H, Parrish JJ, First NL and Memili E. Developmental and Molecular Correlates of Bovine Preimplantation Embryos. (2006) In press. Reproduction 131(5):895-904. PMID: 17052869
  • Simmons S and Isokpehi RD (2006) Alternative Splicing Events of Stress Responsive Genes encoding Universal Stress Protein Domains in Arabidopsis and Rice. Poster A-17. 2006 Intelligent Systems for Molecular Biology Conference, August 6-10, 2006
  • Simmons S, Isokpehi RD (2006) Alternative splicing events of genes in Arabidopsis and Rice encoding the universal stress protein domain. LSMAMP National Research Conference. November 17, 2006, Jackson, Mississippi
  • Thodima V, Pirooznia M, Deng Y, RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers. BMC Bioinformatics, 2006, 7(Suppl 2):S6.
  • Warnock, J. N., S.C. Burgess, L. A. Shack, and A. P. Yoganathan. 2006. Differential Pro-Inflammatory Gene Expression in Porcine Aortic Valve Interstitial Cells Exposed to Elevated Pressure. Journal of Heart Valve Disease. 15:34-41
  • Yang K, Deng Y, Zhang C, and Elasri M, Identification of New Members of Hydrophobin Family Using Primary Structure Analysis, BMC Bioinformatics, 2006, 7(Suppl 4):S16.
  • Yang K, Deng Y, Zhang C, and Elasri M, Identification of New Members of Hydrophobin Family Using Primary Structure Analysis. BMC Bioinformatics, 2006, 7(Suppl 4):S16.
  • Zhang C, Li P, Rajendran A and Deng Y, Parallel Multicategory Support Vector Machines (PMC-SVM) for Classifying Microarray Data. BMC Bioinformatics, 2006, 7(Suppl 4):S15.
  • Zhang Y, Lewis JC, Bergman RG, Ellman JA, Oldfield E. Organometallics, 25(14), 3515-3519 (2006). NMR Shifts, Orbitals, and MH-X in d8 Square Planar Metal Complexes
  • Zhang Y, Oldfield E. J. Phys. Chem. B, 110(1), 579-586 (2006). 31P NMR Chemical Shifts in Hypervalent Oxyphosphoranes and Polymeric Orthophosphates.

2005

  • Chen D, Duggan C, Texada DE, Deng Y, Liang C, Reden TB and Langford MP Induction of caspase-dependant apoptosis by enterovirus 70 in human lens epithelial SRA01/04 cells, American Journal of Infectious Diseases, 2005, 1, 90-106.
  • Cheng F, Sun H, Zhang Y, Mukkamala D, Oldfield E. J. Am. Chem. Soc., 127(36), 12544-12554 (2005). A Solid State 13C NMR, Crystallographic and Quantum Chemical Investigation of Chemical Shifts and Hydrogen Bonding in Histidine Dipeptides.
  • Deng Y, He T, Vanka P, Yang G, Huang Y, Wei S, Brown SJ, Computationally analyzing the possible biological function of YJL103C an ORF potentially involved in the regulation of energy process in yeast. Int. J. Mol. Med. 2005, 15(1):123-127.
  • Diehl, R. H., and R. P. Larkin. 2005. Introduction to the WSR-88D (NEXRAD) for ornithological research. in C. J. Ralph and T. D. Rich, editors. Bird Conservation Implementation and Integration in the Americas: Proceedings of the Third International Partners in Flight Conference 2002. Pacific Southwest Research Station, Forest Service, U.S. Department of Agriculture, Albany, California.
  • Godavarty, A., Eppstein, M.J., Zhang, C., and Sevick-Muraca, E.M., Detection of single and multiple targets in tissue phantoms using fluorescence-enhanced optical imaging, Radiology (Medical Physics), 235: 148-154, 2005. 62)
  • Isokpehi RD and Sarpong DF (2005). Binary-encoded single nucleotide polymorphism annotation of environmental response human genes. Second International Symposium on Recent Advances in Environmental Health Research, September 2005.
  • Shen J, Chang SI, Lee ES, Deng Y, Brown SJ, Determination of cluster number in clustering microarray data, Applied Mathematics and Computation, 2005, 169, 1172-1185.
  • Zhang Y, Mukherjee S, Oldfield E. J. Am. Chem. Soc. (COMM. ED.), 127(8), 2370-2371 (2005). 67Zn NMR Chemical Shifts and Electric Field Gradients in Zinc Complexes: A Quantum Chemical Investigation.
  • Zhang Y, Sun H, Oldfield E. J. Am. Chem. Soc. (COMM. ED.), 127(11), 3652-3653 (2005). Solid-state NMR Fermi Contact and Dipolar Shifts in Organometallic Complexes and Metalloporphyrins.

 

 

]]> http://mcbc-mississippi.org/?feed=rss2&p=44 0 Applications http://mcbc-mississippi.org/?p=38 http://mcbc-mississippi.org/?p=38#comments Sun, 26 Apr 2009 22:18:10 +0000 admin http://mcbc-mississippi.org/?p=38 MCBC Software and Databases:

  • Interwoven Loop Designer: An Interwoven Loop Design For cDNA Microarray Experiments
  • GOfetcher: A Complex Searching Facility for Gene Ontology
  • AgBase: A curated, web-accessible resource for functional analysis of agricultural plant and animal gene products.
  • RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers
  • SVM Classifier: An Application for Support Vector Machine Classification of Microarray Data
  • GeneVenn: A web application for comparing gene lists using Venn diagrams
  • ESTMD: EST Model Database
  • Batch Blast Extractor: An Application for Extracting Information from NCBI Batch Blastx
  • revComp: An Application to generate reverse complement of DNA sequence(s) – Windows executable (700KB)
]]> http://mcbc-mississippi.org/?feed=rss2&p=38 0 Graduate Programs http://mcbc-mississippi.org/?p=36 http://mcbc-mississippi.org/?p=36#comments Sun, 26 Apr 2009 22:16:07 +0000 admin http://mcbc-mississippi.org/?p=36 Computational Science Program within the College of Science and Technology at The University of Southern Mississippi awards Ph.D. and M.S. degrees in Computational Science with emphases in biology, computer science, physics, and mathematics.

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Mississippi Valley State University awards an M.S. degree in Bioinformatics – a two-year, multidisciplinary program in molecular biology, computer science and mathematics.
Other graduate programs in computer science and biological sciences recognize the value of offering training that combines computation and biology.

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]]> http://mcbc-mississippi.org/?feed=rss2&p=36 0 Resources http://mcbc-mississippi.org/?p=33 http://mcbc-mississippi.org/?p=33#comments Sun, 26 Apr 2009 05:45:41 +0000 admin http://mcbc-mississippi.org/?p=33
  • Mississippi Center for Supercomputing Research (MCSR) at the University of Mississippi provides high-performance computing support to institutions of higher learning in the form of Center (SSC).
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  • Engineering Research Center for Computational Field Simulation at the Mississippi State University,
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  • Army High Performance Computing Research Center (AHPCRC) at Jackson State University,
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  • Department of Defense HPC Major Shared Resource Center (MSRC) at Stennis Space Center (SSC)
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  • High Performance Visualization Lab at the University of Southern Mississippi
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  • Mississippi Genome Exploration Laboratory (MGEL) at the Mississippi State University
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  • Life Sciences & Biotechnology Institute (LSBI) at the Mississippi State University
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  • Institute for Digital Biology (IDB) at the Mississippi State University

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]]> http://mcbc-mississippi.org/?feed=rss2&p=33 0 Faculty http://mcbc-mississippi.org/?p=26 http://mcbc-mississippi.org/?p=26#comments Sun, 26 Apr 2009 05:35:51 +0000 admin http://mcbc-mississippi.org/?p=26 Several faculty at the State’s comprehensive universities conduct collaborative research in the area of computational biology, and they represent an essential resource upon which we are building the Mississippi Computational Biology Consortium.

  • Banicescu, Ioana. Computer Science and Engineering. Mississippi State University
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  • Bridges, Susan. Computer Science and Engineering Mississippi State University
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  • Burgess, Shane. College of Veterinary Medicine Mississippi State University
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  • Dandass, Yogi. Computer Science and Engineering Mississippi State University
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  • Deng, Youping. Biological Sciences University of Southern Mississippi
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  • Diehl, Robert. Biological Sciences University of Southern Mississippi
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  • Ervin, Gary. Biological Sciences, Mississippi State University
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  • Isokpehi, Raphael. Biology Jackson State University
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  • Jankun-Kelly T. J.,. Computer Science and Engineering Department, Mississippi State University
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  • Karim, Shahid., Biological Sciences University of Southern Mississippi.
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  • Karsi Attila. Department of Basic Sciences, Mississippi State University
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  • Kong, Yong, Biological Sciences University of Southern Mississippi
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  • Lawrence, Mark. Department of Basic Sciences, Mississippi State University
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  • McCarthy, Fiona. Department of Basic Sciences, Mississippi State University
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  • Nanduri, Bindu. Department of Basic Sciences, Mississippi State University
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  • Oppenheimer, Seth. Department of Mathematics and Statistics, Mississippi State University
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  • Peterson, Daniel. Mississippi Genome Exploration Laboratory (MGEL), Mississippi State University
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  • Pirooznia, Mehdi. Biological Sciences University of Southern Mississippi
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  • Sun, Jonathan. Computer Science, University of Southern Mississippi
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  • Swan, Edward . Computer Science and Engineering Department, Mississippi State University
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  • Yuan, Changhe . Computer Science and Engineering Department, Mississippi State University
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  • Zhang, Chaoyang (Joe). Computer Science, University of Southern Mississippi
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  • Zhang, Yong . Chemistry and Biochemistry, University of Southern Mississippi
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  • Zhang, Song . Computer Science and Engineering Department, Mississippi State University.
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]]> http://mcbc-mississippi.org/?feed=rss2&p=26 0 Seed Research Program http://mcbc-mississippi.org/?p=23 http://mcbc-mississippi.org/?p=23#comments Sun, 26 Apr 2009 05:29:10 +0000 admin http://mcbc-mississippi.org/?p=23 .

BACKGROUND
The Mississippi Computational Biology Consortium (MCBC) is a research thrust of the Mississippi Computational Sciences Network (MCSN). The MCSN is funded by a grant from the Experimental Program to Stimulate Competitive Research (EPSCoR) of the National Science Foundation (NSF). The MCBC aims to stimulate competitive research that combines computation and biology by facilitating innovative collaborations among life scientists and computer scientists within institutions and across institutions in the State of Mississippi. Areas of interest include high-performance computational biology, bio-ontologies, systems biology, computational and mathematical modeling and ecoinformatics. The Seed Research Grant Program is one of the activities developed to achieve the MCBC’s aim.

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SEED RESEARCH GRANT OBJECTIVES
The MCBC Seed Research Grants are designed for faculty to develop innovative projects and gather preliminary data to increase their ability to compete for competitive extramural funding. These grants are intended to stimulate novel research with strong likelihood of attracting competitive funding. Although the budget can remain entirely at a single institution, grants which promote multidisciplinary collaborations between investigators at different MCBC institutions are strongly encouraged.

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ELIGIBILITY
In the first round, interdisciplinary groups of faculty from each of the following three Universities; Jackson State University, Mississippi State University and University of Southern Mississippi will be eligible to submit applications. Relevant research areas include high-performance computational biology, bioinformatics, bio-ontologies, system biology, computational and mathematical modeling and ecoinformatics. One proposal is expected from each university and should include a strong plan to collaborate with at least one other institution. In subsequent rounds, faculty from any research university in the State of Mississippi University System will be eligible to apply for seed research grants.

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FUNDING AMOUNT
Maximum of $25,000.00 per application.

APPLICATION PROCEDURE
Interested faculty should contact the following institution contacts:

Jackson State University:
 Dr. Raphael D. Isokpehi
Department of Biology
Email: raphael.isokpehi@jsums.eduThis email address is being protected from spam bots, you need Javascript enabled to view it
Tel.: 601-979-1678

Mississippi State University:
 Dr. Susan Bridges
Department of Computer Science
Email: bridges@cse.msstate.eduThis email address is being protected from spam bots, you need Javascript enabled to view it
Tel.: 662-325-7505

University of Southern Mississippi:
 Dr. Frank Moore
Department of Biological Sciences
Email: frank.moore@usm.eduThis email address is being protected from spam bots, you need Javascript enabled to view it
Phone: 601.266.4748

Applications should be prepared with the following specifications:
Page Size: 8 x 11 inches, Spacing: Single, Font: Times New Roman or Arial, 12 point

1. Cover Page

a. Proposal Title
b. Principal Investigator and Co-Investigator(s) (Full name, Title, Primary Affiliation, Phone Numbers, Fax Number, E-mail Address)

2. Abstract (Maximum of 200 words)

3. Proposal (Maximum of 5 pages)

a. Overview, Objectives and Significance (1 page)
b. Background and Review of Relevant Literature (1 page).
c. Research Plan including potential problems and alternative strategies and publication plan (2 pages).
d. Expected Results (0.5 page)
e. Potential for generating competitive funding (0.5 page)

4. Budget
All budgets are to be submitted in NSF format. No overheads are allowed. Budgets may include salaries, graduate student/post doctoral stipends/salaries, travel to present research results at Mississippi EPSCoR Research Meeting, supplies, and equipment.

5. Appendices

a. Literature Cited
b. Budget (NSF format, 1 page).
c. Budget Justification (1 page)
d. Curriculum Vitae of all Investigators (NSF format, 2 pages maximum for each investigator)
e. Current and Pending Funding (NSF format).
f. Plan for collaboration with other universities in the MCBC. (0.5 page)
g. Agreement Statement to provide 4 quarterly reports to the Steering Committee and to present the research at the biannual MCBC reporting meetings and at the Mississippi EPSCoR Annual Meeting.

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PROPOSAL REVIEW
Proposals from the 3 universities will be reviewed by the MCBC Steering Committee for scientific merit, relevance to MCBCs aim, multi-disciplinary collaboration, justification of budget, potential for success and subsequent submission of full proposal, and training opportunities for graduate students especially those from underrepresented groups. MCBC Steering may provide input to improve proposals.

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SUBMISSION PROCEDURE, DEADLINE AND NOTIFICATION OF AWARD
Proposal should be contained in a single PDF file and sent as an email attachment to

Dr. Raphael D. Isokpehi
Chair, Steering Committee
Mississippi Computational Biology Consortium
Email: raphael.isokpehi@jsums.edu

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This email address is being protected from spam bots, you need Javascript enabled to view it

]]> http://mcbc-mississippi.org/?feed=rss2&p=23 0 Welcome http://mcbc-mississippi.org/?p=1 http://mcbc-mississippi.org/?p=1#comments Sun, 26 Apr 2009 00:07:33 +0000 admin MCBC Homepage]]> http://mcbc-mississippi.org/?p=1 The Mississippi Computational Biology Consortium (MCBC) is a National Science Foundation funded initiative to stimulate research in computational biology by facilitating innovative collaborations among life scientists and computer scientists within and across institutions in the State of Mississippi.

In 1992, the Directorate for Biological Sciences at the National Science Foundation created the Computational Biology Activity program in response to dramatic changes in computation in biological research. Seven years later, the Directorate mainstreamed research in computation biology into all biology programs, at which time Mary E. Clutter, then Assistant Director of Biological Sciences at the NSF, observed :

We now stand at the gateway to a new age in biology. The success of this new age will depend on how well we cultivate the interface of computer science and technology with the science of biology.  Along with the revolution in the biological sciences has come the equally dramatic explosion in computer and information science and technology.  Working together, these disciplines will ultimately give us the tools to increase our understanding of biological processes at higher orders of complexity, form the behavior of atoms and molecules to cells to organisms to whole ecosystems.



Participants:    



 

 

 

 

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