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Kerr and Churchill (2001) noticed that a loop design stops being optimal when there are more than eight conditions. Therefore it has been suggested that the optimal design could be a form of an interwoven loop design. Figure shows an example of interwoven loop design for an experiment with 7 conditions, 3 replicates and 42 slide arrays. Here we have implemented a web application which allows users to find optimal loop designs for cDNA microarray experiments. Given a number of conditions (such as treatments or time points) and replicates, the application will find the best possible design of the experiment. |
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